Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05288 ATGGCGGTTCCGGGGAGGCGCAATGGCATGAACGAGGAGGACGATGAAGAAGAAGCCAACGCCCTTTTTGAAGAAGAAGGTCTCATCGAATTTGAAGAAGAAATCGATACGCCTCCTCATCTCCGTGCTCTCTCCCGCGCCGCTCAGCGTGGCGACCTCCACGCCCTCCGCCTCGCTCTAGATAACTTGACTGGTAGTATCGATGAGCCAGTGGAGGATGGGGATACAGCTCTTCATTTGACCTGTTTATATGGCCATTTGGAATGTGTCCAGCTCCTAATAGAAAGAGGAGCAGACTTGGAGGCTAAGGATGAGGATGGCGGAATTCCTTTACATGATGCTTGTGCAGGAGGCTTTACAGAGATTGTCCAGCTGCTACTCAACAGTGCTAACAACACAGAGCTTATAAAAAGGATGCTAGAATCAGTTGATTCTGAGGGTGATACTCCTCTTCATCATGCTGCAAGAGGTGAGCATGTTGATGTAATTAGGTTGTTGCTGTGTAATGGAGCCTCGACCACGAAGACGAACTTATATGGAAAGATCCCGGCAGAGTTACCTGATCATGACACAGATGCTAGGAGGCTGCTCCAGGCTGTCTCTAACGGCATGACAAGCTGA 621 0.496 MAVPGRRNGMNEEDDEEEANALFEEEGLIEFEEEIDTPPHLRALSRAAQRGDLHALRLALDNLTGSIDEPVEDGDTALHLTCLYGHLECVQLLIERGADLEAKDEDGGIPLHDACAGGFTEIVQLLLNSANNTELIKRMLESVDSEGDTPLHHAARGEHVDVIRLLLCNGASTTKTNLYGKIPAELPDHDTDARRLLQAVSNGMTS. 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05288 206 ProSiteProfiles Ankyrin repeat region circular profile. 73 105 - -
Seca8g05288 206 ProSiteProfiles Ankyrin repeat profile. 106 138 IPR002110 GO:0005515
Seca8g05288 206 ProSiteProfiles Ankyrin repeat region circular profile. 146 172 - -
Seca8g05288 206 SMART ANK_2a 106 135 IPR002110 GO:0005515
Seca8g05288 206 SMART ANK_2a 39 69 IPR002110 GO:0005515
Seca8g05288 206 SMART ANK_2a 146 175 IPR002110 GO:0005515
Seca8g05288 206 SMART ANK_2a 73 102 IPR002110 GO:0005515
Seca8g05288 206 Pfam Ankyrin repeats (3 copies) 106 176 IPR002110 GO:0005515
Seca8g05288 206 Pfam Ankyrin repeats (3 copies) 41 104 IPR002110 GO:0005515
Seca8g05288 206 ProSiteProfiles Ankyrin repeat region circular profile. 106 132 - -
Seca8g05288 206 Gene3D - 10 107 IPR036770 -
Seca8g05288 206 SUPERFAMILY Ankyrin repeat 33 185 IPR036770 -
Seca8g05288 206 ProSiteProfiles Ankyrin repeat profile. 73 105 IPR002110 GO:0005515
Seca8g05288 206 Gene3D - 108 199 IPR036770 -
Seca8g05288 206 ProSiteProfiles Ankyrin repeat profile. 146 178 IPR002110 GO:0005515
Seca8g05288 206 PANTHER SOWAH (DROSOPHILA) HOMOLOG 34 198 - -
Seca8g05288 206 FunFam BRCA1-associated RING domain protein 1 38 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05288 Seca-Chr8 143503534 143506058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05288 43 189 Ion Channels AT2G25600 32.164 1.59e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05288 - - gmx:100527544 309.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05288 8 143503534 143506058 Seca8g05288 8 143503534 143506058 ECH