Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05269 ATGGACTCCTCCACGCGAGAACTTCAAACGGCAACTTCGTTTCATGATTCCGAGAATGACAGCTGCAAGCGGAGAGGGGAAGGGAAGGTGGTGAACGGCTACATCGTTTATACTCGACGGAAGAGGAACCTCCATTCGGAGAATGAGAAAGCCAAGAGGCTCAAGACCTGCGACAATGCAGGAGTTAAAGTTGAAAGCCGAGTGTTAGTCGAGGAAGCTGCGGTGTGGAACGGCGCCGTTTTCGGGAATTTCAAGCGGCATCGGCGATCGGCGTTGAAGAAGCCGAAGGTTGAGTCAGAAGATGCTGCTGCTGATAAGAGTGACTTGGAATTGAAGATTCCCAACGAGATCATCATGGTCAACAAGAAACCAATGACTGTGAAGGAGCTTTTCGATACTGGTTTGCTCGATGGGATTCCAGTTGTTTACGTGGGTTGCAAGAAGGCTTCAACTTCGGGATTGCGGGGTGTAATTACAGATGGGGGGATATTGTGCTCGTGCTGTCTGTGCAATGGACGCAGAGTTATTCCACCTTCCCAATTCGAGATTCATGCTTGCAATACATATAAGAGGGCAGCGCAGTATATTTGCCTTGAAAACGGGAAGAGCCTTCTTGAACTATTAGGAGCATGCAGAGCAGCTCCCCTAAGTAGCTTGGAGGCGACCATTCAAAATTTTGTTTGTTCGCCACCTGAAGAGAAATATTTTACTTGCAAAAGTTGCAAAGGGTGTTTTCCTTCTTCAACTGTTGAAAGAGTTGGGCTTATATGCCATTCTTGCATGGAATCAAGGAAATCTGAAGACAGTTCTATTCATGCAGTTGGCAAAAGAATCAGGTCCCCTCGACCCATATTGTTCTCTAGCCCATCTTGTACTTCTGAACTGTGCATCTCTTCACAAACTAAAAGACGCTGGAAGACGAGAACAAAGTCATCAAAACGGGTTAGCTGCTCAAATTCTACCAGGAGTGCTTCTGTGCCTATTGTTTTCCGAAAGAAAAGTTTGTGCAGCATGGAGAAGAAGCCTTCGAAACTGTCAGCAAAATTGAAGACCGCTCCCATTACTTCTAATCCAAAGTGTATATCTCCAAAAAATAAGAGTCAGTGGAGGATCACTAAAAAGCATCAGCGATTGCATAAATTAATTTTTGAAGAAAATGGATTGCCTGATGGAGCTGAAGTAGCTTATTATGCACGTGGAAAGAAATTGCTTGAGGGTGTCAAAAGGCGCTCTGGAATTTTTTGTTGGTGCTGCAACACTTTGATCAGTCCCTCACAGTTTGAGGTCCATGCAGGGTGGGCTTCTCGCAGGAAACCTTATGCATACATTTACACATCGAATGGGGTGTCTCTCCATGAGTTAGCAATATTTCTCTCAAAAGATCGTAAATACACTGCAAAGTATAATGATGATGCATGCGTTGTTTGTTGGGATGGTGGAAATCTGTTGCTCTGTGATGGATGCCCAAGGGCATTTCATAAAGAATGTGCATCTATATCAAGTATTCCACGTGGTGAGTGGTACTGTCAAATTTGTCAAAACATGTTCCTTGGAGAAAGATCTGTGACATACAATGCTGATGCTTTAGCAGCTGGAAGGGTTGAAGGAGTTGATCCCATTGAGCAAATTGCCAAGAGATGCATTCGCATAGTGAAGGACGTTCATGCTGAGATTGGTGGATGTGCTTTATGCAGTGGTTCTGACTTCAGCCAATCAGGATTTGGTCCTCGCACAATAATAATTTGTGATCAGTGTGAAAAGGAATATCATGTCGGCTGTTTGAGGGATCATAAGATGGCATATTTGAAGGAGTTGCCGGAAGGGAATTGGTTCTGTTGCAATGATTGCACAAGAATACATTCTATTTTGGAGAAAATCCTGGTTAAGGTGGCTGAGAGACTCCCAGAATCTCTTTTGGATGTTATAAATAAAAAGAAAGAGGAAAGGCTTTTAGAACCCAATAATGAGATTGATGTAAGATGGAGACTTCTTAATGGTAAAGTTGCTTCTCCTGAAACTAGGCCATTGCTTTTGGAGGCCGTGTCAATGTTTCATGTAAGTTCTGCCTGTGCTTATGAACTGCTTCATCATTAA 2094 0.436 MDSSTRELQTATSFHDSENDSCKRRGEGKVVNGYIVYTRRKRNLHSENEKAKRLKTCDNAGVKVESRVLVEEAAVWNGAVFGNFKRHRRSALKKPKVESEDAAADKSDLELKIPNEIIMVNKKPMTVKELFDTGLLDGIPVVYVGCKKASTSGLRGVITDGGILCSCCLCNGRRVIPPSQFEIHACNTYKRAAQYICLENGKSLLELLGACRAAPLSSLEATIQNFVCSPPEEKYFTCKSCKGCFPSSTVERVGLICHSCMESRKSEDSSIHAVGKRIRSPRPILFSSPSCTSELCISSQTKRRWKTRTKSSKRVSCSNSTRSASVPIVFRKKSLCSMEKKPSKLSAKLKTAPITSNPKCISPKNKSQWRITKKHQRLHKLIFEENGLPDGAEVAYYARGKKLLEGVKRRSGIFCWCCNTLISPSQFEVHAGWASRRKPYAYIYTSNGVSLHELAIFLSKDRKYTAKYNDDACVVCWDGGNLLLCDGCPRAFHKECASISSIPRGEWYCQICQNMFLGERSVTYNADALAAGRVEGVDPIEQIAKRCIRIVKDVHAEIGGCALCSGSDFSQSGFGPRTIIICDQCEKEYHVGCLRDHKMAYLKELPEGNWFCCNDCTRIHSILEKILVKVAERLPESLLDVINKKKEERLLEPNNEIDVRWRLLNGKVASPETRPLLLEAVSMFHVSSACAYELLHH. 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05269 697 SUPERFAMILY FYVE/PHD zinc finger 551 618 IPR011011 -
Seca8g05269 697 SMART PHD_3 472 513 IPR001965 -
Seca8g05269 697 SMART PHD_3 560 617 IPR001965 -
Seca8g05269 697 SUPERFAMILY FYVE/PHD zinc finger 460 515 IPR011011 -
Seca8g05269 697 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 559 619 IPR013083 -
Seca8g05269 697 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 459 536 - -
Seca8g05269 697 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 557 619 - -
Seca8g05269 697 MobiDBLite consensus disorder prediction 1 16 - -
Seca8g05269 697 ProSiteProfiles Zinc finger PHD-type profile. 470 515 IPR019787 -
Seca8g05269 697 Pfam Tify domain binding domain 156 208 IPR032308 -
Seca8g05269 697 Pfam Tify domain binding domain 406 456 IPR032308 -
Seca8g05269 697 ProSitePatterns Zinc finger PHD-type signature. 473 512 IPR019786 -
Seca8g05269 697 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 458 531 IPR013083 -
Seca8g05269 697 Pfam PHD-finger 473 514 IPR019787 -
Seca8g05269 697 PANTHER AUTOIMMUNE REGULATOR 63 687 - -
Seca8g05269 697 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05269 Seca-Chr8 143239495 143245399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05269 105 685 PHD Transcription Factor Family AT2G36720 48.693 0.0 585
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca8g05269 TDBD 2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05269 - - gmx:100816654 950.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05269 8 143239495 143245399 Seca2g04718 2 133400642 133413573 PCT