Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05262 ATGGACACAATGTTGGTGCCACCATGGCTCAATTCACTGCTTAACACACCCTTTTTCAATGTGTGTCGGATTCATGGAGATGCCGCCAGGAGCGAATGTAACATGTTTTGCTTGGACTGCAATGTTGATGCCTTTTGCTTTTATTGCCGTTCCTCAAGACACAAGGATCACCAAGTCATTCAGATAAGGCGATCTTCTTATCATGATGTGGTGAGAGTGGCAGAAATTCAGAAGGTGTTGGACATTAGTGGAGTTCAGACATATGTGATCAACAGTGCCAGAGTTCTGTTTCTGAATGAGAGGCCTCAGCCAAAATCTGGGAAAGGAGTAGCTCACATTTGTGAGATTTGTGGAAGAAGCCTCTTAGACCCATTTCGCTTCTGTTCTTTGGGATGTAAGCTTGTAGGAATAAGGAGAAATGGGGATGCAAGCTTTGTTTTGGATGGTAACAATGAGGCATCTTCAATGGAGGGAATGTCAAGGAGCTCAGTCTCTTCAAGACAGCAAAGAGAAGAATTGCGTGAAGGCTCACAACAAGATATGTATCCAGCCACGCCTCCTACACCTGCTTCAAACGCAAGGAGAAGAAAAGGCATTCCTCATAGGGCTCCTTTTGGCTCCTAA 624 0.4487 MDTMLVPPWLNSLLNTPFFNVCRIHGDAARSECNMFCLDCNVDAFCFYCRSSRHKDHQVIQIRRSSYHDVVRVAEIQKVLDISGVQTYVINSARVLFLNERPQPKSGKGVAHICEICGRSLLDPFRFCSLGCKLVGIRRNGDASFVLDGNNEASSMEGMSRSSVSSRQQREELREGSQQDMYPATPPTPASNARRRKGIPHRAPFGS. 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05262 207 Pfam PLATZ transcription factor 63 134 IPR006734 -
Seca8g05262 207 SUPERFAMILY B-box zinc-binding domain 19 64 - -
Seca8g05262 207 MobiDBLite consensus disorder prediction 151 166 - -
Seca8g05262 207 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 3 205 - -
Seca8g05262 207 MobiDBLite consensus disorder prediction 151 207 - -
Seca8g05262 207 Gene3D Classic Zinc Finger 20 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05262 Seca-Chr8 143135344 143137775 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Seca8g05262 PLATZ 1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05262 - - gmx:100809455 365.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05262 8 143135344 143137775 Seca8g05262 8 143135344 143137775 ECH
Seca8g05262 8 143135344 143137775 Seca2g04724 2 133475982 133478329 PCT