Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05257 ATGGCAGAACCTGAAGCACCTACTACCAACTCCTCCACCGCCACTCCTCCGCCGGTGTCCAAGAGCTGGGCCGACGAAGCAGAAGATGAAACCAACGCCTCTTCGAGCTCCGCAACAGAATCCTCGTCGCTCAACGTAGAAGGATTAGCGATCGACGAGAACAAGAAGTCTTCCAAGTTATTGGACGAACCCGAGGACTCCAACATCCAAGCGGTTACCTCCGGCGACACTCCGTATACCTCGGCGGCCACCTTTGAAGAGCTGAATCTCTCGCCGGAGCTAGTAAAGGGACTCTATGTGGAGATGAAGTTCCAGAAACCTAGCAAAATCCAAGCCATAAGCTTGCCCATGATCCTGAGCCCTCCGCATAAGGATTTGATTGCGCAGGCGCATAACGGTTCCGGCAAGACCACTTGTTTCGTGCTTGGGATGCTTAGTCGCGTGGATCCAAAGTTGCAGGCTCCTCAAGCTCTCTGCATTTGCCCCACCAGGGAGCTGGCTATTCAGAATATTGAAGTTCTGCGAAAGATGGGAAAGTACACAGGGATCAGTTCAGAATGTGCCGTGCCCACGGATAGAAGGGACTCCCTTCCAATAAGTAAACGGCCACCAATTATGGCTCAGGTGGTTATTGGGACTCCTGGCACGATTAAGACATGGATGTCTTATAAGAAACTTGGGGTGACAAGATTAAAGATTCTTGTTTTTGATGAGGCTGATCAAATGCTTGCTGAGGATGGATTTAAAGATGATTCCCTGAGGATAATGAAAGACATAGAAAAATTCAATTATAGCTGTCAGGTTCTTCTGTTTTCTGCTACATTCAATGAGACTGTCAAGAATTTTGCTTCAAGGACAGTTAAGAATGATCATAATAAACTATTTGTAAAGAAAGAAGAATTATCTTTAGATGCTGTGAAGCAATATAAAGTGCATTGTCCAGATGAGCTCTCTAAGATTGAAGTCATAAAAGATTACATACTTGAAATGGGAGAGAATGTGGGGCAAAGTATTATATTTGTACGGACAAGAAATAGTGCAAGAATGTTGCATAAATCCCTTGTTGATTTGGGCTACGAGGTTTCCTCCATACAAGGTGCTCTTGACAATGAAATGAGAGACAAGATTGTCAAGGAGTTCAGAGATGGTTTGACTCAGGTTCTTATATCAACTGATGTTCTTGCCCGGGGCTTTGATCAGCAACAGGTTAATTTGGTTATCAACTATGATCTTCCGGTGAAATACACTGCTGGGTATAACCCCGATCCTGAGCCTGATTATGAGGTATATTTGCACAGGGTTGGTAGGGCTGGGCGTTTTGGGCGCAAGGGGGCTGTATTTAACCTGATATGTGACGAAAGGGATGAAAAGCTCTTGTCAAAGATTGTGAACCATTTTGGCACTCATGTATCTGAGGTGCGTGAAAAGAGTATTGAAGACTATAAAGCTGCTCTTAAGGAAGCTGGTTTACTGCAATGA 1479 0.4496 MAEPEAPTTNSSTATPPPVSKSWADEAEDETNASSSSATESSSLNVEGLAIDENKKSSKLLDEPEDSNIQAVTSGDTPYTSAATFEELNLSPELVKGLYVEMKFQKPSKIQAISLPMILSPPHKDLIAQAHNGSGKTTCFVLGMLSRVDPKLQAPQALCICPTRELAIQNIEVLRKMGKYTGISSECAVPTDRRDSLPISKRPPIMAQVVIGTPGTIKTWMSYKKLGVTRLKILVFDEADQMLAEDGFKDDSLRIMKDIEKFNYSCQVLLFSATFNETVKNFASRTVKNDHNKLFVKKEELSLDAVKQYKVHCPDELSKIEVIKDYILEMGENVGQSIIFVRTRNSARMLHKSLVDLGYEVSSIQGALDNEMRDKIVKEFRDGLTQVLISTDVLARGFDQQQVNLVINYDLPVKYTAGYNPDPEPDYEVYLHRVGRAGRFGRKGAVFNLICDERDEKLLSKIVNHFGTHVSEVREKSIEDYKAALKEAGLLQ. 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05257 492 SMART ultradead3 103 309 IPR014001 -
Seca8g05257 492 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 457 IPR027417 -
Seca8g05257 492 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 44 462 - -
Seca8g05257 492 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 117 293 IPR014001 -
Seca8g05257 492 MobiDBLite consensus disorder prediction 29 48 - -
Seca8g05257 492 CDD SF2_C_DEAD 306 450 - -
Seca8g05257 492 Gene3D - 300 489 IPR027417 -
Seca8g05257 492 Gene3D - 61 299 IPR027417 -
Seca8g05257 492 Pfam Helicase conserved C-terminal domain 319 441 IPR001650 -
Seca8g05257 492 MobiDBLite consensus disorder prediction 1 76 - -
Seca8g05257 492 Pfam DEAD/DEAH box helicase 109 281 IPR011545 GO:0003676|GO:0005524
Seca8g05257 492 MobiDBLite consensus disorder prediction 1 19 - -
Seca8g05257 492 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 83 112 IPR014014 GO:0003724
Seca8g05257 492 SMART helicmild6 348 441 IPR001650 -
Seca8g05257 492 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 322 482 IPR001650 -
Seca8g05257 492 CDD DEADc_DDX19_DDX25 90 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05257 Seca-Chr8 143073753 143078537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05257 84 473 Eukaryotic Initiation Factors Gene Family AT1G72730 36.962 3.16e-70 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05257 K18655 - gmx:100778091 746.117