Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05244 ATGGGGGACAACGCCGAAGACGACAGGACCGACAGCAGCGATTTCACCTCCGAGGACGAAGGCACCGAGGATTACCGCCGCGGCGGCTACCACGCCGTCCGAATCGGCGACACCTTCAACGCTGGTCGCTACGTCGTTCAGAGCAAGCTCGGTTGGGGCCATTTCTCCACTGTCTGGCTCGCTTGGGACACCCTTCATTCTAGATATGTGGCCTTGAAAGTTCAAAAGAGTGCTCAGCATTACACCGAGGCAGCCATGGACGAGATAACCATTTTGCAACAGATTGCAGAGGGTGACCCGGATGATAAAAAATGTGTGGTCAAGCTTTTGGACCATTTCAAGCATTCTGGTCCAAATGGACAGCATGTCTGCATGGTGTTTGAGTACCTTGGGGATAATCTCTTAACTCTTATTAAGTATTCCGATTATCGTGGATTGCCTATCAACATGGTTAAAGAGATATGCTTTCATATTCTGGTTGGATTAGATTATTTACACAAGCAGCTTTCTATCATACATACTGACTTGAAACCTGAAAACATCCTCCTCTTGTCAATGATAGATCCATCTAAGGATCCTAGAAATTCTGGTGCTCCCCTTATTCTTCCCAATAGTAAGGATAAGACAGTGCTGGAGTCAGCAGCTGCAAAAGACACGAAAACAGCAAATGGGGATTTAATTAAGAATCATAAGAAAAAGATTAAAAGAAAAGCCAAACAAGCAGCTCATGGATGTGCAGAGAAGGAAGCTTCTGAAGGAGTTGAGGGTAAACCTGAAACCTCTGGTGCTGTAGAATCATCTCCGAATGCAAGTTCTGCGAGAGTACAAGCTTCTAGTTCTGCTGGGACCAGTAGGTTATCAGATGCTGATGGAGCAAAGTCAAAAGAACAGAGCAATAAAAGAGGAAGCCGCTCAATGAGACAGAAACTGCTGGCTTCAGTTGATCTCAAGTGCAAGTTAGTTGACTTTGGTAATGCTTGCTGGACATATAAACAGTTTACAAATGATATCCAGACAAGACAATATCGGTGCCCAGAAGTGATCCTTGGATCAAAATATTCTACATCTGCAGATCTTTGGTCCTTTGCTTGCATTTGTTTTGAGCTTGCAACTGGAGATGTGTTATTTGATCCTCACAGTGGTGACAACTTTGATAGGGATGAGTTTAATTTACCTCAGGACCACTTAGCACTAATGATGGAGCTTCTTGGAATGATGCCACACAAGATTGCACTAGGGGGCCGTTATTCCCGTGATTTCTTTAACAGATATGGTGATCTGAGGCACATCCGTCGGTTGCGATTCTGGCCATTGAATAAAGTCCTCATGGAGAAGTATGATTTTAGTGAGAAAGATGCAAGTGACATGACTGACTTTTTGGTTCCTATTCTTGACTTTGTTCCTGAGAAACGGCCTACGGCTGGTCAGTGTTTGCTACATCCATGGATGAATGCAGGTCCTCGTCTTTTAGAGCCATCTATGCCTTCTTCTAATCACAACCCTGCTGCTGAAACTGCTGTTATTTCCGACCAGAAGAAAAGGGACAAAGATGAGAGGGAGGCCATGGAAGCAGGAATGGGAAATATTGCTATCAATTCAGATTCTAAACTACTCATGCATTCTCCATCTAAGAAAGCTTTCCAGGGAAGCAGCCACAAGTAG 1662 0.4446 MGDNAEDDRTDSSDFTSEDEGTEDYRRGGYHAVRIGDTFNAGRYVVQSKLGWGHFSTVWLAWDTLHSRYVALKVQKSAQHYTEAAMDEITILQQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGDNLLTLIKYSDYRGLPINMVKEICFHILVGLDYLHKQLSIIHTDLKPENILLLSMIDPSKDPRNSGAPLILPNSKDKTVLESAAAKDTKTANGDLIKNHKKKIKRKAKQAAHGCAEKEASEGVEGKPETSGAVESSPNASSARVQASSSAGTSRLSDADGAKSKEQSNKRGSRSMRQKLLASVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADLWSFACICFELATGDVLFDPHSGDNFDRDEFNLPQDHLALMMELLGMMPHKIALGGRYSRDFFNRYGDLRHIRRLRFWPLNKVLMEKYDFSEKDASDMTDFLVPILDFVPEKRPTAGQCLLHPWMNAGPRLLEPSMPSSNHNPAAETAVISDQKKRDKDEREAMEAGMGNIAINSDSKLLMHSPSKKAFQGSSHK. 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05244 553 Gene3D Transferase(Phosphotransferase) domain 1 127 484 - -
Seca8g05244 553 MobiDBLite consensus disorder prediction 240 255 - -
Seca8g05244 553 Gene3D Phosphorylase Kinase; domain 1 20 126 - -
Seca8g05244 553 ProSitePatterns Protein kinases ATP-binding region signature. 50 73 IPR017441 GO:0005524
Seca8g05244 553 MobiDBLite consensus disorder prediction 221 306 - -
Seca8g05244 553 MobiDBLite consensus disorder prediction 289 303 - -
Seca8g05244 553 SUPERFAMILY Protein kinase-like (PK-like) 39 497 IPR011009 -
Seca8g05244 553 ProSiteProfiles Protein kinase domain profile. 44 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05244 553 MobiDBLite consensus disorder prediction 494 553 - -
Seca8g05244 553 FunFam Serine/threonine-protein kinase SRPK-like protein 308 483 - -
Seca8g05244 553 SMART serkin_6 44 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05244 553 FunFam CMGC/SRPK protein kinase 30 129 - -
Seca8g05244 553 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Seca8g05244 553 MobiDBLite consensus disorder prediction 1 24 - -
Seca8g05244 553 CDD STKc_SRPK 33 483 - -
Seca8g05244 553 MobiDBLite consensus disorder prediction 534 553 - -
Seca8g05244 553 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 11 511 - -
Seca8g05244 553 Pfam Protein kinase domain 311 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05244 553 Pfam Protein kinase domain 44 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05244 553 MobiDBLite consensus disorder prediction 262 287 - -
Seca8g05244 553 MobiDBLite consensus disorder prediction 508 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05244 Seca-Chr8 142927158 142935459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05244 10 536 EF-hand Containing Proteins AT5G22840 70.169 0.0 748
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Seca8g05244 Pkinase 8e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05244 K08832 - gmx:100810777 992.26