Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05243 ATGGTTCTCAAGACCGAACTTTGCCGTTTCAGTGGGGCGAAAATCTACCCTGGGAAAGGCATCAGATTTATTCGTAGTGATTCTCAGGTCTTCCTGTTTGCTAACTCAAAATGCAAAAGGTATTTCCACAACAGGTTGAAGCCATCAAAGCTCACCTGGACTGCAATGTATAGGAAGCAACACAAGAAGGACATTGCCCAAGAAGCTGTGAAGAAGAGGCGCCGAGCAACCAAAAGGCCTTACTCTAGGTCCATTGTTGGTGCTACTTTGGAAGTTATTCAGAAAAGAAGAAGTGAGAAGCCAGAGGTTCGAGATGCTGCTAGAGAAGCTGCTCTTCGTGAAATTAAGGAGAGGGTCAAGAAAACAAAGGATGAGAAAAGAGCTAAGAAGGCAGAAACTCAGGCTAAGGTACAAAAATCACAAGGCAAAGGCGGTGTTGGCAAGGTGGCTGCACCCAAAGGTCCTAAGCTTGGCGGTGGAGGCGGGAAGCGCTGA 495 0.4707 MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKRPYSRSIVGATLEVIQKRRSEKPEVRDAAREAALREIKERVKKTKDEKRAKKAETQAKVQKSQGKGGVGKVAAPKGPKLGGGGGKR. 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05243 164 Gene3D - 69 139 - -
Seca8g05243 164 CDD Ribosomal_L24e_L24 3 56 IPR000988 -
Seca8g05243 164 ProSitePatterns Ribosomal protein L24e signature. 10 27 IPR023442 -
Seca8g05243 164 Gene3D Ribosomal protein L24e 3 64 IPR038630 -
Seca8g05243 164 PANTHER 60S RIBOSOMAL PROTEIN L24 4 142 IPR000988 -
Seca8g05243 164 MobiDBLite consensus disorder prediction 117 136 - -
Seca8g05243 164 Pfam Ribosomal protein L24e 4 67 IPR000988 -
Seca8g05243 164 FunFam 60S ribosomal protein L24 3 64 - -
Seca8g05243 164 MobiDBLite consensus disorder prediction 117 164 - -
Seca8g05243 164 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 58 - -
Seca8g05243 164 Coils Coil 112 136 - -
Seca8g05243 164 SMART 4TRASH 8 46 IPR011017 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05243 Seca-Chr8 142923601 142925818 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05243 1 157 Cytoplasmic Ribosomal Protein Gene Family AT2G36620 84.076 1.61e-86 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05243 K02896 - cpap:110822896 252.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05243 8 142923601 142925818 Seca8g05243 8 142923601 142925818 ECH
Seca8g05243 8 142923601 142925818 Seca2g04743 2 133682532 133684933 PCT