Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05242 ATGGAGTGGAATGGGAGCACAAGACGCTTTGTTCCTAGAGCAGAGTCTTCCTTAAGCTTCCTCTACAACTATAACCATAACCCATATCCAGGAATGGAAATGAAACAACAAGCAGCACTGATGGAGACACCAGCACCAATATTGGAAAAAATGAACCATGAGAAGAAGAAGCGATTAACAAGTGACCAGCTTGACTCACTGGAGAGTAGTTTTCAGAAGGAGATAAAGTTAGACCCTGATAGGAAGATGAAGCTTGCTAAGGAGTTAGGCCTCCAGCCTCGACAAATTGCTGTTTGGTTCCAAAATAGGCGTGCAAGGTGGAAGGCCAAGCAACTTGAACACTTGTATGATTCACTCAAACAGGAATTTGATGTAGTTTCAAAGGAAAAACAGAAACTTGAAGCAGAGGTAGTGGTGCAGGTTATGAAGTTAAAGGGGATGCTGAGAGAGCAAGGTTCTAGAACGCAAGTGTCAGCAGAAATCTCTGGTGAGGAAACAGTAGATCAAAGCACGTCAGAGGCTCTGCGTTGCTCCAACAGGGCGCGGGGAAAGATTCATCATTATCAGCAGAGTATTACTGAGGGAAACTGTTCTTTCACTAATACTCACATGGTCATGGAGGATTATAACACAGTTCCACTTATGCCCTATTGGCCTGGATTTCCTTGTTATCCTTAG 678 0.4381 MEWNGSTRRFVPRAESSLSFLYNYNHNPYPGMEMKQQAALMETPAPILEKMNHEKKKRLTSDQLDSLESSFQKEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWKAKQLEHLYDSLKQEFDVVSKEKQKLEAEVVVQVMKLKGMLREQGSRTQVSAEISGEETVDQSTSEALRCSNRARGKIHHYQQSITEGNCSFTNTHMVMEDYNTVPLMPYWPGFPCYP. 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05242 225 SMART HOX_1 53 114 IPR001356 GO:0003677
Seca8g05242 225 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 49 172 IPR045224 GO:0003700
Seca8g05242 225 Coils Coil 102 136 - -
Seca8g05242 225 ProSiteProfiles 'Homeobox' domain profile. 50 110 IPR001356 GO:0003677
Seca8g05242 225 PRINTS Lambda-repressor HTH signature 81 90 IPR000047 GO:0003677
Seca8g05242 225 PRINTS Lambda-repressor HTH signature 90 106 IPR000047 GO:0003677
Seca8g05242 225 SUPERFAMILY Homeodomain-like 53 120 IPR009057 -
Seca8g05242 225 CDD homeodomain 55 111 IPR001356 GO:0003677
Seca8g05242 225 Gene3D - 48 116 - -
Seca8g05242 225 FunFam Putative homeobox-leucine zipper protein ATHB-51 52 115 - -
Seca8g05242 225 ProSitePatterns 'Homeobox' domain signature. 85 108 IPR017970 GO:0000981|GO:0006355
Seca8g05242 225 Pfam Homeodomain 55 108 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05242 Seca-Chr8 142898663 142901140 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05242 1 146 Homeobox Transcription Factor Family AT5G03790 52.663 8.84e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Seca8g05242 Homeodomain 1.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05242 - - gmx:100778007 324.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05242 8 142898663 142901140 Seca8g05242 8 142898663 142901140 ECH
Seca2g04744 2 133695134 133696711 Seca8g05242 8 142898663 142901140 PCT