Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05241 ATGAGACGGGTTTGGCTCCCCAGTTTTACACAAAACCTGTGGGTTATCCTTCCAAAGCCACACTCCCTTCACAAAACCATGGGCAGTTTTTCTGTCAACACCAACAAAACCGGTTGCTTCAACACGCACACTTTCTCTCTCTCAATCTCTTCCTCTTTTATATACATTTGTCTCTCCCTAACAACCCAATCCTTCATCAACTTCAATGTAATCCCGTCCCAATTTCTGTTTCTTCACTTTGCTTTTTCCATCTCAATCCCTCAAAGCCAAGACAAACCGAACGAGCTGGTGAATAGTGTGATGCTACACTTTGATCCCCCTCAATTCACAACCAAAATTTTGTTCACCCTTTTTGCACTGTTCAACTATTCGATTAACGGCATCAGTTCTGGATTGCTAGGAGTAGAAAGCCCTTTACAACAGCAACAACAGAACCTCTCTAATCAGCAAAATCCTCACCATTTGCACCATCCCCAAATGGTTTCTTATGCTCCCCACCATGAAACCGACACACACCAACAACAGCTACAGCAACCAATCAAACATGGGTACCCTCCTTATTCAGCCAAGAGCAAGCAACAACAAAGCTCCCTCAGTGATGAGGATGAGCCTGGGTTCCATGCAGAAGAGAGCTCAGGGGACCCCAAGAGGAAGATTTCACCTTGGCAGAGAATGAAGTGGACAGATACCATGGTTAGGCTCTTGATAATGGCGGTTTATTACATTGGTGATGAAGCTGGTTCAGAAGGGACTGACCCCACTGGGAAGAAGAAGTCAACGGGTTTGCTGCAGAAGAAAGGGAAATGGAAATCAGTGTCAAGGGCTATGATGGAAAAGGGGTTCTATGTGTCTCCTCAGCAATGTGAGGATAAGTTCAATGATTTGAACAAGAGGTACAAGAGAGTGAATGATATACTTGGAAAGGGAACAGCTTGCAGGGTGGTGGAAAATCAGAACTTGTTGGATACAATGGACTTGTCACCAAAGATGAAAGAGGAAGTGAAAAAGTTACTCAATTCCAAGCACTTGTTCTTCAGGGAAATGGGACTGAGGATGTTGAAAGTGGGAAGTGGGGAAGAGGATGATGATGAGGATGAGGATGATGACTCAGAGGACTATTCTGATGAGGATGAAGAAGAATCAGGAGAAGGTGGTTCTAGGGGACAAGTTGGGCATGGACATGAAGATGAGGATGAGAATGATGGAAGGACATCAAGGAAAAGGTCAAGGAAAACAGTAGGGCTTTCTATGTCATCCCATATGATGCAGCAACTGAACACTGAGGTAACTGGTGTGTTGCAAGATGGGGGTAGGAGCCCTTGGGAGAAAAAGCAATGGATGAAGAGTAGGATAATGCAATTAGAGGAGCAGCAAATTAGCTATCAAACTCAAGCATTTGAGCTGGAAAAGCAGCGGTTGAAATGGGCAAGGTTTAGCAGCAAGAAGGAGAGGGAAATGGAGAGAGCTAAACTTGAAAATGAACGCAGAAGGCTAGAAAATGAGAGAATGGTTTTGGTCATTCGACAGAAGGAGCTTGAATTGCTGAGTATTCAACAACAGCAACAACATCATCAGCAACAGCAACAGCAGCAACAACAACAGCAACATTCTTCCACATAG 1620 0.4432 MRRVWLPSFTQNLWVILPKPHSLHKTMGSFSVNTNKTGCFNTHTFSLSISSSFIYICLSLTTQSFINFNVIPSQFLFLHFAFSISIPQSQDKPNELVNSVMLHFDPPQFTTKILFTLFALFNYSINGISSGLLGVESPLQQQQQNLSNQQNPHHLHHPQMVSYAPHHETDTHQQQLQQPIKHGYPPYSAKSKQQQSSLSDEDEPGFHAEESSGDPKRKISPWQRMKWTDTMVRLLIMAVYYIGDEAGSEGTDPTGKKKSTGLLQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVENQNLLDTMDLSPKMKEEVKKLLNSKHLFFREMGLRMLKVGSGEEDDDEDEDDDSEDYSDEDEEESGEGGSRGQVGHGHEDEDENDGRTSRKRSRKTVGLSMSSHMMQQLNTEVTGVLQDGGRSPWEKKQWMKSRIMQLEEQQISYQTQAFELEKQRLKWARFSSKKEREMERAKLENERRRLENERMVLVIRQKELELLSIQQQQQHHQQQQQQQQQQQHSST. 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05241 539 Coils Coil 451 471 - -
Seca8g05241 539 MobiDBLite consensus disorder prediction 383 408 - -
Seca8g05241 539 Gene3D - 227 301 - -
Seca8g05241 539 MobiDBLite consensus disorder prediction 165 219 - -
Seca8g05241 539 MobiDBLite consensus disorder prediction 166 181 - -
Seca8g05241 539 MobiDBLite consensus disorder prediction 355 418 - -
Seca8g05241 539 MobiDBLite consensus disorder prediction 518 539 - -
Seca8g05241 539 Pfam Myb/SANT-like DNA-binding domain 224 316 IPR044822 -
Seca8g05241 539 Coils Coil 479 508 - -
Seca8g05241 539 PANTHER F16F4.11 PROTEIN-RELATED 126 519 - -
Seca8g05241 539 MobiDBLite consensus disorder prediction 202 219 - -
Seca8g05241 539 MobiDBLite consensus disorder prediction 359 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05241 Seca-Chr8 142879942 142882054 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca8g05241 Myb_DNA-bind_4 3.2e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05241 - - gmx:547619 473.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05241 8 142879942 142882054 Seca8g05241 8 142879942 142882054 ECH
Seca8g05241 8 142879942 142882054 Seca2g04747 2 133730725 133732104 PCT