Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05238 ATGCCAGACCAACTCACGGAAGGCACGCTCCGTCAAACCCTCCCACACACACTTTCTCTCAACGCTCCACTCTCTTTCCCTAACGTCCCCGACGACGCCGTTCCCTCAAACCTTACCGTTATGGCCTCTTGCGACGACGACGACGATTTCTCACTCCTCCGTGACGACAACCACCACCATCACCACCTCCACCAATCCTACGCGCCGCACCACCACTTCTCAACCGCCTCCGTCCAACCCAAATCCGTCGCCGACGAAGACGCCGAAGATTACGGAAATCCGTTCGACGACGACGGCGGGAGCGAGAAGCGAAAGGATCGGGAGGAGATCGGCGACGGAACGACACCGTACGGGTTCAACAAGAGGCCAAAGGCGGCGCCGGTCGCTGGCGGAGGGGGAGGAGAGTACCGGAAGGATCGGGAGGAGTGGAGCGACACGGCGATCGTATGCTTGCTAGAGGCGTACACAGAGAAGTTCACGCAGCTGAATCGGGGGAACCTGAGAGGTAGGGATTGGGAGGAGGTGGCGGCGGTGGTGAGCGAGCGGTGCGAGAACCAGTCGAAGAGCGTGGAGCAGTGCAAGAACAAGGTGGATAACCTGAAGAAGCGATACAAGCTTGAGAGGCACAGGATGAACAATGGCTGCATCTCCACCAGTCACTGGCCTTGGTTCAAGCAGATGGAACACATCGTCGGAAATTCTCTCCCTGCCAAGTTCACCGATGAGGATAAAGCCCTTGTTCCTGCTTCAAATTCACCCAGGCAATCCAAGAGTGGAGGTCAAGTAAACAGCATGAAGTCCAAAGCATTGTCAAACCTTAGATGGCGGAGGGTAGTGCTCAAAATTAGTGGAGCAGCTCTTACTGGATCTGATACCTGCAATATTGACCCTAAGGTGGCCATGTTAGTTTCAAGTGAAGTTGCAATAGCTTCCCGCCTTGGTGTGGAGGTGGCGATTGTTGTTGGAGGTCGTAATTTCTTCTGTGGAGATGCATGGGTAACTGCAACAGGTTTAGAAAGATGTACTGCATACCAAGTTGGCATGATGGCAACTGTGATGAATTCAATATTGCTTCAATCAACTCTAGAGAAGATGGGTGTTCAGACTCGTGTACAAACTTCAGTTGCCATGCAAGAATTTGCTGAACCATACAACAGGCAGCGGGCCATCAGACATCTTGAGAAAGGAAGAGTTGTTATATTTGGTGGTATTGGTTTTGGCGCTGGCAATCCACTTTTCTCAACTGACATAGCTGCAGCTCTTCGTGCTTCAGAGCGTATGCTGCTGTCTCTTTTTAACTTTGTAGTTAATGCTCAGGCAGTCCTCAAAGGTACTAATGTAGATGGTGTCTATGACTGCAACTCCCGAGACAATAATTTTACTTTCGAGCATATATCATTCAGGGAGCTGGCATCCAGAGGTGTCACCTCTATGGATATGTCAGCACTGACATTCTGTGAGGAAAATGCTATTCCTGTTGTGGTTTTTAATCTATTGGCGCCCGGGAACATCTCAAAAGCTTTGTGTGGAGAACAAGTAGGCACACTAATTGACCAAACTGGAGCAATAAGCTAA 1575 0.5079 MPDQLTEGTLRQTLPHTLSLNAPLSFPNVPDDAVPSNLTVMASCDDDDDFSLLRDDNHHHHHLHQSYAPHHHFSTASVQPKSVADEDAEDYGNPFDDDGGSEKRKDREEIGDGTTPYGFNKRPKAAPVAGGGGGEYRKDREEWSDTAIVCLLEAYTEKFTQLNRGNLRGRDWEEVAAVVSERCENQSKSVEQCKNKVDNLKKRYKLERHRMNNGCISTSHWPWFKQMEHIVGNSLPAKFTDEDKALVPASNSPRQSKSGGQVNSMKSKALSNLRWRRVVLKISGAALTGSDTCNIDPKVAMLVSSEVAIASRLGVEVAIVVGGRNFFCGDAWVTATGLERCTAYQVGMMATVMNSILLQSTLEKMGVQTRVQTSVAMQEFAEPYNRQRAIRHLEKGRVVIFGGIGFGAGNPLFSTDIAAALRASERMLLSLFNFVVNAQAVLKGTNVDGVYDCNSRDNNFTFEHISFRELASRGVTSMDMSALTFCEENAIPVVVFNLLAPGNISKALCGEQVGTLIDQTGAIS. 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05238 524 MobiDBLite consensus disorder prediction 249 267 - -
Seca8g05238 524 Pfam Myb/SANT-like DNA-binding domain 140 230 IPR044822 -
Seca8g05238 524 Pfam Amino acid kinase family 277 497 IPR001048 -
Seca8g05238 524 Gene3D - 270 518 IPR036393 -
Seca8g05238 524 FunFam Aspartate/glutamate/uridylate kinase family protein 143 206 - -
Seca8g05238 524 MobiDBLite consensus disorder prediction 61 138 - -
Seca8g05238 524 MobiDBLite consensus disorder prediction 247 267 - -
Seca8g05238 524 SUPERFAMILY Carbamate kinase-like 274 517 IPR036393 -
Seca8g05238 524 Coils Coil 183 210 - -
Seca8g05238 524 Gene3D - 143 206 - -
Seca8g05238 524 PANTHER URIDYLATE KINASE 136 523 - -
Seca8g05238 524 CDD AAK_UMPK-PyrH-Ec 276 518 IPR015963 GO:0005737|GO:0006221|GO:0033862
Seca8g05238 524 MobiDBLite consensus disorder prediction 96 112 - -
Seca8g05238 524 FunFam Uridylate kinase isoform A 267 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05238 Seca-Chr8 142851210 142856222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05238 127 234 Trihelix Transcription Factor Family AT3G14180 37.838 3.04e-17 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca8g05238 AA_kinase 1.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05238 - - gmx:100805176 792.341