Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05234 ATGAACATGAACATGAACGTGAACATGGGGAACAACACTAGTGGGACAGCAACGGTTCCTGCAGTGCAAGCCACAGGAGTAGCAACAGTGACAACAACACCTGGAAGCACTGGAGGAGGAGGGAGCTTTGATTTGTTTGGTAAAAAGAAGAGAGGCAGGCCAAGAAAATATGACTCAGATGGGAACCTGAGGTTGACGTACAAGAAGAGTGTAACCCCAACACCACCACCTTCACAAGGTTTCACTTTGTCAACAACAAATGAGTTTTCTTCCAAAAGGGGTCGTGGTAGGCCAACTGGGTTTGGAGGAAACTACCAACTCCTTGCTTCTTTTGGTGAGGTTTTTGCAAGCACGGCTGCTGGGGATTTTACACCGCATGTAGTGACTGTTTATACTGGAGAGGATGTTGCTGGAAAGATCTTGTCATTCGCCCAGAAGGGTCCAAGAGGAATATGCATTCTTTCTGCTAATGGAGCTATCTCTAATGTCACCATACGGCAACCCGGTTCTTCTGGTGGCATATTGACTTACGAGGGTCGATTTGAGATTTTATCTTTGTCTGGATCGTTCACTGTCTCCGACAATAGTGGCATGAAGAATAGAACTGGTGGATTGAGTGTCTCACTTGCTGGCCCTGATGGTCGGGTGATAGGAGGTGGAGTTGCTGGTCTATTGACAGCTGCTGGCCCCATCCAAATTGTAGTGGGAAGCTTTATGCCAAATGGTCATAAGACTCATAAAAGAAAGTACCAACGTGAACACACAGTGGCATCCCCTCCTTCAGCTGGTCCAGATACAGTGACAGCAGCAAGGCCTATCTCACAAGCAAATGCTGATGGTGAAAACTTTCTGATGCATATGTCTCAGTTACCAACTCAAAGTCAGAGTCAGAGAGAATCTCTAAGTGTTTCAAGTGATAAACAAAACCTAGATGCCACACCTGATGCTGCTACATGGAATGGTTCTGAAGAATTTTCAGACCAGAGGACATCCCCTGACATCAACATATCTTTACCTGATGAATAG 1026 0.4591 MNMNMNVNMGNNTSGTATVPAVQATGVATVTTTPGSTGGGGSFDLFGKKKRGRPRKYDSDGNLRLTYKKSVTPTPPPSQGFTLSTTNEFSSKRGRGRPTGFGGNYQLLASFGEVFASTAAGDFTPHVVTVYTGEDVAGKILSFAQKGPRGICILSANGAISNVTIRQPGSSGGILTYEGRFEILSLSGSFTVSDNSGMKNRTGGLSVSLAGPDGRVIGGGVAGLLTAAGPIQIVVGSFMPNGHKTHKRKYQREHTVASPPSAGPDTVTAARPISQANADGENFLMHMSQLPTQSQSQRESLSVSSDKQNLDATPDAATWNGSEEFSDQRTSPDINISLPDE. 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05234 341 MobiDBLite consensus disorder prediction 242 268 - -
Seca8g05234 341 MobiDBLite consensus disorder prediction 291 335 - -
Seca8g05234 341 MobiDBLite consensus disorder prediction 32 97 - -
Seca8g05234 341 SUPERFAMILY AF0104/ALDC/Ptd012-like 121 250 - -
Seca8g05234 341 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 16 308 IPR039605 GO:0003680
Seca8g05234 341 MobiDBLite consensus disorder prediction 46 63 - -
Seca8g05234 341 Pfam Plants and Prokaryotes Conserved (PCC) domain 125 238 IPR005175 -
Seca8g05234 341 MobiDBLite consensus disorder prediction 65 93 - -
Seca8g05234 341 MobiDBLite consensus disorder prediction 291 341 - -
Seca8g05234 341 Gene3D - 125 257 - -
Seca8g05234 341 ProSiteProfiles PPC domain profile profile. 120 262 IPR005175 -
Seca8g05234 341 SMART AT_hook_2 48 60 IPR017956 GO:0003677
Seca8g05234 341 SMART AT_hook_2 92 104 IPR017956 GO:0003677
Seca8g05234 341 CDD DUF296 124 238 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05234 Seca-Chr8 142765083 142768257 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05234 48 309 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 49.442 4.91e-71 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05234 - - gmx:100779227 466.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05234 8 142765083 142768257 Seca8g05234 8 142765083 142768257 ECH