Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05218 ATGGAAATGGAAGAAGACCACCACCATCAACAATATGGCATGACCACCGATCTCAGGCAACTCGTAAACGCCTCAAGGTCGACCCATTTCCCCTCGCCACACCCCACCGTCGAGCTTTTTCCCGGTCACCGGAATCTCACACCCTTGGCCTCTCCCCACCACCAACAACACTTTGAGATGATGATGTTCGGTCGTGGACTTCACGACTTTGCTACCACCACCACCGATGCTGCTGCTGCAGCTAGTATCTCTACTCTTCCCTCTCCTGCAGTTGCCACCACCAGTGCTTCAACTCCTCCACTTAGCGGCTTAGAGGCTGAGACCGCACCTTGCATCGGTGGAGACGCCTCCACTGGAAGATGGCCCAGACAAGAGACTCTTACTCTTCTTGAGATCAGATCTCGCCTCGACCCTAAATTCAAAGAAGCTAATCAAAAGGGACCCTTATGGGATGAAGTCTCTAGAATCATGTCTGAAGAACATGGATATCAAAGGAGTGGGAAAAAGTGCAGGGAGAAGTTTGAGAACCTTTACAAATATTACAAGAAGACAAAAGAAGGTAAGGCAGGAAGACATGATGGGAAGCATTACAGGTTCTTTCGTCAACTTGAAGCCTTATATGGAGAAAACAGTAACAACACACCCTCACTCCCTGCAGAAAACAATTTTGTAAACTGTCTTAATTTCCAGACCCCTTCCCAAACAAATCAAGAACTAATGTTTCAGTCTCATCACAATAAACATTGTGATAGCCTCAGCCTCACTAACTCCACTGACTTTGCCACATCATCATCTGATGATGATGACAATATTGATCATACTCTTAGCAATGAGAATGACTCCACCAGGAGAAAGAGGAAGAGTAGTGGAAGGAGCTGGAAGGTGAAGATAAAAGACTTCATTGACTCACAGATGAGGAACCTTGTGGACAAGCAAGAGGAGTGGTTGGATAAGATTGTGAAGACACTGGAGGAGAAGGAAAAGGAGAGGATGTTAAGAGAGGAGGAGTGGAGGAAACAAGAGGTGAGCAGGTTAGAGAGGGAGAAAAGGTTTTGGGCTAAAGAGAGGGCATGGATTGAAGCAAGGGATGCTGCTCTAATGGAAGCTTTGCAAAATATAACAGGAAGAGATATGAAGGCTGATCATGAGGGTGTAATGCCAGCTCATGAAATTCAAAACCAGAATGAAGATGGAAGTGAAATCTTGAATAGCACTGTCAGAGGTGGTGCTGATAGCTGGCCAGAATCTGAGATCACAAGGCTTCAACAGTTGAAAACTGAGATGGAGACAAGGTTTATTCCACAAAGTGGGGGGTGTTCAGAAGAGGTTACATGGGAGGAGGTAGCAACCAAAATGGCTTGTTTTGGATATGAGAGAACTGCTTTGATGTGCAAGGAGAAATGGGAAAGTATCTGCAACTATCCAAGGGATGCCAATGCCAAGGAAGGTAATAACAAGAAGGGGAAGGAAAATTCTAGAAGTTGTTTTTACTTCAATAGCAATGATCAATCTTCCCTATATAATCAAGGAAGTAGCTATTGTGATCAAAGGCAGGAGATAATTGGGAAGCTGCAAACAAATGATGGTTCTTCACCTTCAAATTCCAATGTTGCTCCTTCTGACAGCTGCTTTCCCTTCTTGATGAGTGAGGGAGGAAATTTGTGGGAGAATTATGGCTTAAAGCTCAGTAAAGCTGCAAACCAAAACCACTGA 1713 0.4478 MEMEEDHHHQQYGMTTDLRQLVNASRSTHFPSPHPTVELFPGHRNLTPLASPHHQQHFEMMMFGRGLHDFATTTTDAAAAASISTLPSPAVATTSASTPPLSGLEAETAPCIGGDASTGRWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRHDGKHYRFFRQLEALYGENSNNTPSLPAENNFVNCLNFQTPSQTNQELMFQSHHNKHCDSLSLTNSTDFATSSSDDDDNIDHTLSNENDSTRRKRKSSGRSWKVKIKDFIDSQMRNLVDKQEEWLDKIVKTLEEKEKERMLREEEWRKQEVSRLEREKRFWAKERAWIEARDAALMEALQNITGRDMKADHEGVMPAHEIQNQNEDGSEILNSTVRGGADSWPESEITRLQQLKTEMETRFIPQSGGCSEEVTWEEVATKMACFGYERTALMCKEKWESICNYPRDANAKEGNNKKGKENSRSCFYFNSNDQSSLYNQGSSYCDQRQEIIGKLQTNDGSSPSNSNVAPSDSCFPFLMSEGGNLWENYGLKLSKAANQNH. 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05218 570 FunFam trihelix transcription factor PTL-like 121 183 - -
Seca8g05218 570 FunFam Trihelix transcription factor GT-2 413 477 - -
Seca8g05218 570 CDD GT1 120 185 - -
Seca8g05218 570 ProSiteProfiles Myb-like domain profile. 113 178 IPR001005 -
Seca8g05218 570 CDD GT1 413 474 - -
Seca8g05218 570 ProSiteProfiles Myb-like domain profile. 412 472 IPR001005 -
Seca8g05218 570 Coils Coil 316 336 - -
Seca8g05218 570 PANTHER FI21293P1 86 543 - -
Seca8g05218 570 MobiDBLite consensus disorder prediction 266 286 - -
Seca8g05218 570 MobiDBLite consensus disorder prediction 261 288 - -
Seca8g05218 570 Gene3D - 413 476 - -
Seca8g05218 570 Gene3D - 121 183 - -
Seca8g05218 570 SMART sant 117 180 IPR001005 -
Seca8g05218 570 SMART sant 409 474 IPR001005 -
Seca8g05218 570 Pfam Myb/SANT-like DNA-binding domain 411 502 IPR044822 -
Seca8g05218 570 Pfam Myb/SANT-like DNA-binding domain 120 206 IPR044822 -
Seca8g05218 570 MobiDBLite consensus disorder prediction 90 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05218 Seca-Chr8 142498868 142501440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05218 3 568 Trihelix Transcription Factor Family AT5G03680 44.750 4.72e-143 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca8g05218 Myb_DNA-bind_4 5.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05218 - - aprc:113870891 773.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05218 8 142498868 142501440 Seca8g05218 8 142498868 142501440 ECH
Seca8g05218 8 142498868 142501440 Seca2g04776 2 134056052 134059321 PCT