Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05216 ATGCGTAATTCTTCTAGCTCTGCAGGAGAAACAGGACGTCATCCAGTGTACCGTGGAGTGAGGCGTAGGAGTAGTGGCAAATGGGTGTCTGAAATCAGAGAGCCAAAAAAGCCTAACAGAATTTGGTTAGGCACATTCCCTACACCTGAAATGGCTGCTGTTGCCTATGATGTTGCTGCCTTTGCTCTTAAGGGTAAGGATGCTGAGCTTAACTTCCCTGACTCAGCTTCTTCATTGCCTGTCCCTGCCTCTTTGTCTGCCCGTGATATTCAGGTGGCTGCAGCTAGTGCTGCTGCTGCTGCTGGGGCAGCAAGGGATGCTTTGTCTGCTGGTGGTAGTAGTAGTAGTAGTACTGGTGTTGAGGGAATTAGGAATGATTATTTTTCATCACAACAACAGGTGGAAGGGGTTAATCATAATAACCAGTTTGTGGATGAGGATTTGATCTTTGATATGCCTAATGTTCTGGTTAATATGGCACAGGGAATGCTGCTTAGTCCTCCTCCTTTTGACATTGGTGGGGAGGCTGATGACAACATGGATCAAGAGCCAAGCCTCTGGAATTTCCCTTAA 573 0.4695 MRNSSSSAGETGRHPVYRGVRRRSSGKWVSEIREPKKPNRIWLGTFPTPEMAAVAYDVAAFALKGKDAELNFPDSASSLPVPASLSARDIQVAAASAAAAAGAARDALSAGGSSSSSTGVEGIRNDYFSSQQQVEGVNHNNQFVDEDLIFDMPNVLVNMAQGMLLSPPPFDIGGEADDNMDQEPSLWNFP. 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05216 190 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Seca8g05216 190 PRINTS Ethylene responsive element binding protein signature 55 75 IPR001471 GO:0003700|GO:0006355
Seca8g05216 190 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 11 188 IPR045277 GO:0003700
Seca8g05216 190 Pfam AP2 domain 15 65 IPR001471 GO:0003700|GO:0006355
Seca8g05216 190 FunFam Ethylene-responsive transcription factor 2 15 74 - -
Seca8g05216 190 CDD AP2 17 75 IPR001471 GO:0003700|GO:0006355
Seca8g05216 190 Gene3D AP2/ERF domain 16 74 IPR036955 GO:0003700|GO:0006355
Seca8g05216 190 MobiDBLite consensus disorder prediction 1 29 - -
Seca8g05216 190 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700|GO:0006355
Seca8g05216 190 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Seca8g05216 190 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05216 Seca-Chr8 142446694 142447266 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05216 6 190 AP2-EREBP Transcription Factor Family AT2G36450 60.317 1.80e-59 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca8g05216 AP2 2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05216 - - pvu:PHAVU_007G222600g 223.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05216 8 142446694 142447266 Seca8g05216 8 142446694 142447266 ECH