Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05214 ATGCCGAAACCGAAAATGCAGAAACGAAAAGCTGGAAGGAAGAAGTTCCAAGAGACTCGACACCCGATTTACAAAGGTGTGAGGCAGAGGAATGGGAAGTGGGTGTGTGAGCTACGACAACCTAACAACAAAACACGTGTGTGGCTTGGAACTTTTGCTCACCCTGACATGGCAGCTATAGCTTATGATGTTGCTGCTTTGGCTTTCAAAGGTGATGCTGCTTCCTTGAATTTCCCACACGCTGCTACCTCTTTGCCGCGCCTTAATTCTCGAACCTCTTCTATTAGAGCCATTCAGTTTGCGGCAATGCAAGCCGCTGAGAAAAACTTTTCTTTCATCCGTCATGATGCCAGTAGTGAGATTGTTCCCGCCAAGAATGATAACGGTTCGGGTGATCAGTTGTTGTCATTGGATAATTGCATGGGGATCAGGTCCGCGGAGGAAGATTCTGGAAGGTTCTTTTGGGATGAAGAGGAGGTGTTCAACATGCCGGTTTTGATAGACAGTTTGGCGGAAGGGTTGATTATCACACCGCCTGCCTTGCAAAGAGGATTCAATTGGGCTGGTGGGGAAACTACTATAGACTTGACTCTTTGGGGAAATTGA 606 0.4719 MPKPKMQKRKAGRKKFQETRHPIYKGVRQRNGKWVCELRQPNNKTRVWLGTFAHPDMAAIAYDVAALAFKGDAASLNFPHAATSLPRLNSRTSSIRAIQFAAMQAAEKNFSFIRHDASSEIVPAKNDNGSGDQLLSLDNCMGIRSAEEDSGRFFWDEEEVFNMPVLIDSLAEGLIITPPALQRGFNWAGGETTIDLTLWGN. 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05214 201 SMART rav1_2 23 85 IPR001471 GO:0003700|GO:0006355
Seca8g05214 201 MobiDBLite consensus disorder prediction 1 20 - -
Seca8g05214 201 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Seca8g05214 201 SUPERFAMILY DNA-binding domain 23 80 IPR016177 GO:0003677
Seca8g05214 201 CDD AP2 22 81 IPR001471 GO:0003700|GO:0006355
Seca8g05214 201 MobiDBLite consensus disorder prediction 1 16 - -
Seca8g05214 201 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 7 199 IPR045277 GO:0003700
Seca8g05214 201 Gene3D AP2/ERF domain 23 81 IPR036955 GO:0003700|GO:0006355
Seca8g05214 201 ProSiteProfiles AP2/ERF domain profile. 23 79 IPR001471 GO:0003700|GO:0006355
Seca8g05214 201 PRINTS Ethylene responsive element binding protein signature 61 81 IPR001471 GO:0003700|GO:0006355
Seca8g05214 201 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05214 Seca-Chr8 142409558 142410163 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05214 8 199 AP2-EREBP Transcription Factor Family AT4G25490 43.077 2.35e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca8g05214 AP2 2.2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05214 - - gmx:100778541 287.73