Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05213 ATGATGGCTCATAAGCACTTGCACGAGCTACTCAAGGAGGATCAAGAACCATTCCTTCTAAAGAACTACATTTCCGACAGACGCAGCCAGCTGAAGAAAAGGCCTTCCCCAAAAACCACTCTCCAAGTCAAGAAACAAAAACCAACAACAACAACCCTTCATCAAACCTCAAACTCATTATTCCCCATTAACCTCTGCAGAAACGCTTGCTTCCTCTCCTTCCAAAACACATCACCAGACCTCAGAAAATCCCCTCTCTTCGAATTCGCATCCCCAGCCAAGAGCCCCCACAGGTCCTCCAACGCTATCTTCCTCCACATCCCTGCCCGAACAGCTTCTCTTCTCCTCGAAGCCGCTCTCAGGATTCAGAAACAGTCAAAGACCAAACCCCACCATAAAAACAACGCCTTTGGGCTATTCGGGTCGTTCTTCAAGAGACTAACGCAACGAGGAAGAAACAGAAGGAATGAAATTGAAAGTGGAATCAACTCAAAGGTCTCTGTGAAGGATATCTTGAGATGGGACTCCTCTGTTGGGAAAAAAAGTACTAAAAGACCTTCCAATGGAAGCAGAAACGTGGTGGAAGAAAACAAGGATGTTATAGCTGAGGAAGTGGGGTTCACGTGTTCTTGCAATGGCAGGCCTAGCAGTGCTGTGTGGTCGGAGAGCAACGAGGACAAATCGCTTGAAATGGAAACTTCAAGTAGTGGCCACTCTTATGACTCTGTTGAAGAGACAGAGTTTGTGGACAAACAGAAAGAAAACACCGAATGCACTTGCTTCGATAATCACAGCTTCTTCTGTGAAAGCCCTTTCCGTTTTGTTCTCCAAAGAAGCCCCTCCACCTCCTCCGGCCGCCGTACGCCGGAATTTCCCTCGCCGGCGGGTTCACCTACTCGCCGCAGAACAGAGGACAAAGAGAGTAATGGAGCTGGTGGAGTCAACAAATTCCAATCAGGGGAAGAAGAGGAAGAGAAGGAACAGTGCAGTCCAGTATCTGTTTTAGACCCACCCTTCAAGGATGATGATGATGGGCATGAAAACGACGATGAAGATGGTGGTTTTGATTTGGAGTGTAGCTATGCCAATGTACAAAGAACTAAGCAGCAGCTATTAGACAGGCTTCGTAGATTTGAGAAACTTGCAGAGTTAGATCCATTAGAGCTTGAGAAAAGAATGCTAGATGAAGAAGACAATGAGTGTGAAACATATATTGAAGAGGATGACAGTGAGACATCATGTGAAGAAAAGGCCTTGAGAGAATTAATCTATGAAATCCTGTGTGTTCAAGGCAGAAGGGAAGCCCCAGAAGACCTTAAGAGACTAGTTTATGATCTCATTATGGAGGAAGAGAGAGGACTTAATTCATCAGAAGATAGGAACATGGTGATGAGAAGGGTTTGCATGAGGCTGGAAATGTGGAAAGAAGTGGAATCCAACACCATTGATATGATGATAGAAGAGGACTTCTCTAATGAGGAAAGTGAGTGGAAGAAAAACTCTGAGCAGACAATGGAGCTGGCTGGGGAACTTGAACTTGCTATATTTTGCTTTCTTGTGGAGGAATTTTCAGAGGAATTAGTATGTTAA 1590 0.4509 MMAHKHLHELLKEDQEPFLLKNYISDRRSQLKKRPSPKTTLQVKKQKPTTTTLHQTSNSLFPINLCRNACFLSFQNTSPDLRKSPLFEFASPAKSPHRSSNAIFLHIPARTASLLLEAALRIQKQSKTKPHHKNNAFGLFGSFFKRLTQRGRNRRNEIESGINSKVSVKDILRWDSSVGKKSTKRPSNGSRNVVEENKDVIAEEVGFTCSCNGRPSSAVWSESNEDKSLEMETSSSGHSYDSVEETEFVDKQKENTECTCFDNHSFFCESPFRFVLQRSPSTSSGRRTPEFPSPAGSPTRRRTEDKESNGAGGVNKFQSGEEEEEKEQCSPVSVLDPPFKDDDDGHENDDEDGGFDLECSYANVQRTKQQLLDRLRRFEKLAELDPLELEKRMLDEEDNECETYIEEDDSETSCEEKALRELIYEILCVQGRREAPEDLKRLVYDLIMEEERGLNSSEDRNMVMRRVCMRLEMWKEVESNTIDMMIEEDFSNEESEWKKNSEQTMELAGELELAIFCFLVEEFSEELVC. 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05213 529 MobiDBLite consensus disorder prediction 279 356 - -
Seca8g05213 529 MobiDBLite consensus disorder prediction 216 248 - -
Seca8g05213 529 Coils Coil 361 381 - -
Seca8g05213 529 MobiDBLite consensus disorder prediction 35 54 - -
Seca8g05213 529 Coils Coil 387 407 - -
Seca8g05213 529 MobiDBLite consensus disorder prediction 29 54 - -
Seca8g05213 529 PANTHER OS04G0572500 PROTEIN 2 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05213 Seca-Chr8 142385573 142388856 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05213 1 340 TRM (TON1 Recruiting Motif) Superfamily AT5G03670 46.629 5.28e-63 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05213 - - gmx:100814311 577.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05213 8 142385573 142388856 Seca8g05213 8 142385573 142388856 ECH
Seca8g05213 8 142385573 142388856 Seca2g04780 2 134127978 134131504 PCT