Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05212 ATGGACTTGCAGCTGAAGCAATGGAAAAACCAGTATGAGTCAGAGCAACAACATTCTACAAAGAAACCAAAATTTCTACCTGAACCCCCTCAACAGCCACAATCTTCTGCCTCTGCATTCCCTTTGTTTGTACCTGAACTCAACAGCAAAGTCAGCACCCTGTCATCCTTGTCTGATTCAACCTTAGCTGCTGTTACCAGATTTCCCAGGATGGGGAGTTATTTCAGCTTTGCACAATGGCAGGAGCTTGAGTTGCAGGCTTTGATATTCAGATACATGTTAGCTGGTGCTGCTGTTCCTCCTGAGCTTCTTCAACCAATCAAGAAAAGCATTCTTCTTTCCACTTCATATTTCCTCCCACACCCTCTTCAACATTATCACCCTCATTTGTTGCAATCAGGGTACTGGGGAAGAGGAGCCATGGACCCAGAGCCTGGCCGGTGCCGGAGGACCGACGGCAAAAAGTGGCGGTGCTCGAGGGACGTGGTGGCGGGTCAGAAGTACTGTGAGCGCCACATGCATCGTGGTCGAAACCGTTCAAGAAAGCCTGTGGAACTACCAATACCAACTAGTGCCACTGGTGGATCTCATTCTCTTGCTGCTACAACTTCCATTTCTTCACCCTCTATAGCAGCTTCCTCATTCAAATCCCCATTTGATCTCCTTCACCTCAATGAACGTAGTTCCTCTGGGATTAAGAATGATAGCAAGAGCTTGTTTGAAAACAAAGATCATGTGGATGGGGATGACAGATCTAATGGCCATATCCTGAGGCATTTCTTTGATGATTGGCCGCGTGGTGAAAGCAATGCTGGAAGGATCAACTCAGTTACATGTCTCTCTATTTCAACGCCTTCCTCTGATGTGTCATTGAAATTGTCCACTGGCTACAGAGAGGAACATTGCCCAAGAAATGAGAATGTGGAGGCACAGCAGCAACTGCAGTTGAACTGGGCGGAAGGATGGAGATCAGCTTCTCAATTGGCTTCCATGGGAGGACCACTTGCAGAGGCATTGAGATCATCCACCTCAACTTCATCACAAACAAGTGTGCTTCTTCAATTGCCTCTTAGTTCTGCATCTGAGACTAGCTTCATTAGCGCCTAG 1107 0.4724 MDLQLKQWKNQYESEQQHSTKKPKFLPEPPQQPQSSASAFPLFVPELNSKVSTLSSLSDSTLAAVTRFPRMGSYFSFAQWQELELQALIFRYMLAGAAVPPELLQPIKKSILLSTSYFLPHPLQHYHPHLLQSGYWGRGAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVELPIPTSATGGSHSLAATTSISSPSIAASSFKSPFDLLHLNERSSSGIKNDSKSLFENKDHVDGDDRSNGHILRHFFDDWPRGESNAGRINSVTCLSISTPSSDVSLKLSTGYREEHCPRNENVEAQQQLQLNWAEGWRSASQLASMGGPLAEALRSSTSTSSQTSVLLQLPLSSASETSFISA. 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05212 368 MobiDBLite consensus disorder prediction 1 37 - -
Seca8g05212 368 Pfam WRC 143 185 IPR014977 -
Seca8g05212 368 ProSiteProfiles WRC domain profile. 142 186 IPR014977 -
Seca8g05212 368 SMART QLQ_2 73 109 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca8g05212 368 MobiDBLite consensus disorder prediction 172 200 - -
Seca8g05212 368 PANTHER GROWTH-REGULATING FACTOR 5 35 287 IPR031137 GO:0005634|GO:0006351|GO:0032502
Seca8g05212 368 Pfam QLQ 75 107 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca8g05212 368 ProSiteProfiles QLQ domain profile. 74 109 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05212 Seca-Chr8 142340811 142343249 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05212 1 359 GRF Transcription Factor Family AT3G52910 49.740 1.53e-90 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Seca8g05212 WRC 2.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05212 - - aip:107648821 449.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05212 8 142340811 142343249 Seca8g05212 8 142340811 142343249 ECH
Seca8g05212 8 142340811 142343249 Seca2g04782 2 134208319 134211702 PCT