Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05210 ATGGGTTCGTTCTCTGGAACTTGTGAAATTGTTGAAGCAAGGGAAGACCTAAATACAGGGAAAGATGCAGGGATATTTCTGTCCAATTCTGGATATAGTGTGGCTGAGAAAAATCAGAAGCTTCCTGTGCTGAAACTGGGATACAAGGATAACCTACATGATGATATTAATAAGCTGTTTGAATCAATTACTCTCAAATCTTCATCAAGGGATTCGGCCGTTTTACAAGATGGAACAAGCCCTAAGATGAAAAGTGCACTAAAAAAGCCAATTACAGTGGGTGTTTCTCGGTCCCCACGAGTTGGGACTTCTGAGCCGGTGACTTTGAAGCAGGCACTAAGAGACCTATGTATATCTAAGGCATCAGAAATGGCTGCTATGAAAAGATTATCAAAGTCAACAGCTTCTCCTAGAATATCTGAGGTTGGGAAGATACAGACATTGTACAATTCAGTTGTAGCTGAAGCTAGACGGTCTGGGCCTTCAAATGTTGCGAGCAAAGGGAGTACAATTGAAATTTCTCTAGTTCCAGAAGAAAGCAAGTCACTTCCCTTGAATAAAGAATCCCAGTCTCATCAAACTGCCAGAAGCACATCATTAAGCCAAAATGTTCATTCTTCCAAAAATGCTGTTGCAACTACACAAAATGATACTGGGGCTTCATTGATGCAAAGTGATTTGGCATGTTCATCAAGTAAAGTTGGGGTTCCATCACAGCCTGCTCAAATAGAAAAACAAACAACTCCATCTTCTCCATCTAGTTGTATCACCAATGGAAGTAAATTAGAGTTTCCTGAAAATGCTTCCTCACCTAAAAAATTAGGAAATAAAGCATCTGCGTCAAAGAATGGGCGGAAAGGTAGGTTACAAACAGCATCTTCCTCATCTACTTCAGTAAATGGAAATAGAGTGTGCAAACTGTCGCGCAATGGCCCCCGTACAGTCAAATCAGTCATCAAGAACAAGAATTTGGGCAAGAAGAAAGTAAAGCAGGATTCTGTTTCTGCATTATTTGATCCTCCATCCAATAAAGTAAATAACAAGCCAGTTCCTGGTACAACTCCACTTGTTTGTGAGAGATGTTGGTGTGCTATAGAAAATACAAACATAGAAAACAGCAAAGGTATTATAACATCGGATTCTATCAGGCCTGCAGATGGAATAAAATCAAGTAATGTGCACTCTGGCTCAGCATCAACTGGCTGTAATAGCATCCGAGAAGTTACAAAAGTGAAAAAGAACACCAGATTGAAAGAGCAACTTGAATTTTCACAAAGTTCAAAAAGTAGCCAAGGTGATTACAGTAGTAGTACAAGTACCAGTGATGAGAGCAATGTCAGTGGATCTACTTCTGGCAATAGACCTCACATGTCAAAGGATGCTAGATGGGAAGCCATACGACATGCTCAAATACAACATGGAGTCTTGGGCTTGAGACACTTTAATCTTTTGAAGAAGCTTGGTTGTGGAGACATTGGGACTGTATATCTTGCTGAACTAATTGGCAAAAATTGTTTGTTTGCTATTAAGGTCATGGACAATGAATTTTTGGCAAGAAGGAAGAAGATGCCTAGGGCTCAAACTGAAAGAGAAATTTTAAGGATGCTGGATCATCCTTTTCTTCCAACACTGTATGCACAGTTTACATCAGATAATCTGTCATGTCTGATCATGGAGTATTGTCCAGGTGGAGATCTTCATGTTCTACGACAGAAGCAGCTTGGCAGAAGTTTTTCAGAGCCAGCAGCAAGGTTTTATGTTGCTGAAGTCCTTCTCGCTTTGGAGTACTTGCACATGCTTGGTGTTGTTTACCGTGATTTGAAACCTGAAAACATTCTTGTTCGAGAAGATGGCCACATTATGCTCACAGATTTTGACCTGTCACTAAGGTGTGATGTTAGCCCAACGCTTTTGAAATCATCTGATGTGGATCCTGCTAAGATTTCTGGTCCTTGTGCACAATCGAGTTGCATTGAGCCATTCTGCATTGAACCACCATGTCAAGTTCCATGCTTCAGCCCTAGGTTCTTACCCCCTGCGGCAAAAGCTAGGAAATTAAAAGCTGACCTTGCTGCTCAGATCAGATCATTGCCACAGCTCGTGGCCGAGCCCACGGATGCAAGATCAAATTCATTTGTTGGTACTCATGAATACCTAGCGCCTGAGATCATCAAAGGAGAGGGACATGGAGCTGCAGTTGACTGGTGGACATTTGGTGTTTTTCTTTATGAGCTTTTATATGGTAGAACACCCTTTAAAGGTTCTAATAATGAAGAAACATTAGCCAACGTGGTGCTGCAAGGTCTCAGATTCCCTGACAGCCCATTTGTTAGTTTCCAAGCGAGGGATCTCATTAGAGGGTTGTTGGTTAAAGAGCCTGAAAACCGCTTGGGTTCAGAGAAAGGGGCTGCCGAGATTAAACAGCATCCCTTCTTCGAGGGCCTTAATTGGGCCTTAATACGTTGTGCTATCCCACCGGAAATTCCAGACCTTTGTGAGTTTGTAGTTTCAGACATGACCCCACAGTCACAAGGCAAAGGCGGTAAGTATTTAGAGTGTACAGCAACTGGAGAACAAGTGGAATTTGAGTTGTTTTAA 2598 0.4172 MGSFSGTCEIVEAREDLNTGKDAGIFLSNSGYSVAEKNQKLPVLKLGYKDNLHDDINKLFESITLKSSSRDSAVLQDGTSPKMKSALKKPITVGVSRSPRVGTSEPVTLKQALRDLCISKASEMAAMKRLSKSTASPRISEVGKIQTLYNSVVAEARRSGPSNVASKGSTIEISLVPEESKSLPLNKESQSHQTARSTSLSQNVHSSKNAVATTQNDTGASLMQSDLACSSSKVGVPSQPAQIEKQTTPSSPSSCITNGSKLEFPENASSPKKLGNKASASKNGRKGRLQTASSSSTSVNGNRVCKLSRNGPRTVKSVIKNKNLGKKKVKQDSVSALFDPPSNKVNNKPVPGTTPLVCERCWCAIENTNIENSKGIITSDSIRPADGIKSSNVHSGSASTGCNSIREVTKVKKNTRLKEQLEFSQSSKSSQGDYSSSTSTSDESNVSGSTSGNRPHMSKDARWEAIRHAQIQHGVLGLRHFNLLKKLGCGDIGTVYLAELIGKNCLFAIKVMDNEFLARRKKMPRAQTEREILRMLDHPFLPTLYAQFTSDNLSCLIMEYCPGGDLHVLRQKQLGRSFSEPAARFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCDVSPTLLKSSDVDPAKISGPCAQSSCIEPFCIEPPCQVPCFSPRFLPPAAKARKLKADLAAQIRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKGEGHGAAVDWWTFGVFLYELLYGRTPFKGSNNEETLANVVLQGLRFPDSPFVSFQARDLIRGLLVKEPENRLGSEKGAAEIKQHPFFEGLNWALIRCAIPPEIPDLCEFVVSDMTPQSQGKGGKYLECTATGEQVEFELF. 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05210 865 MobiDBLite consensus disorder prediction 272 307 - -
Seca8g05210 865 SMART serkin_6 481 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05210 865 PANTHER FLIPPASE KINASE 1-RELATED 214 834 - -
Seca8g05210 865 FunFam serine/threonine-protein kinase D6PK-like 565 632 - -
Seca8g05210 865 MobiDBLite consensus disorder prediction 183 211 - -
Seca8g05210 865 FunFam Serine/threonine-protein kinase D6PK-like 479 564 - -
Seca8g05210 865 MobiDBLite consensus disorder prediction 381 459 - -
Seca8g05210 865 FunFam serine/threonine-protein kinase D6PK-like 707 830 - -
Seca8g05210 865 Gene3D Transferase(Phosphotransferase) domain 1 561 629 - -
Seca8g05210 865 Gene3D Phosphorylase Kinase; domain 1 479 560 - -
Seca8g05210 865 MobiDBLite consensus disorder prediction 231 312 - -
Seca8g05210 865 MobiDBLite consensus disorder prediction 420 456 - -
Seca8g05210 865 ProSiteProfiles Protein kinase domain profile. 481 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05210 865 SUPERFAMILY Protein kinase-like (PK-like) 460 838 IPR011009 -
Seca8g05210 865 ProSitePatterns Serine/Threonine protein kinases active-site signature. 602 614 IPR008271 GO:0004672|GO:0006468
Seca8g05210 865 MobiDBLite consensus disorder prediction 231 265 - -
Seca8g05210 865 Gene3D Transferase(Phosphotransferase) domain 1 705 830 - -
Seca8g05210 865 MobiDBLite consensus disorder prediction 381 408 - -
Seca8g05210 865 MobiDBLite consensus disorder prediction 179 211 - -
Seca8g05210 865 Pfam Protein kinase domain 482 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05210 865 Pfam Protein kinase domain 709 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05210 865 CDD STKc_phototropin_like 479 831 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05210 Seca-Chr8 142328259 142333080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05210 1 865 AGC Kinase Gene Family AT3G52890 53.057 0.0 854
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Seca8g05210 Pkinase 8.1e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05210 - K08286 gmx:100813470 1430.62