Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05206 ATGAAGGTGATCGCTGCGTATTTACTGGCCGTTCTTGGAGGCAACACCAGCCCCTCCGCTGATGACATCAAGAACATCCTTGGCTCAGTTGGAGCAGAAGCAGATGATGATAGGATTGAACTATTTTTGTCTGAAATTAAGGGTAAGGATATAGTCGAGGTTATTGCTGCCGGTAGGGAAAAGTTGGCATCAGTGCCTGCTGGTGGTGGTGGTGGTGGTGTTGCGGTTGCTGCCGCACCTGGTGGAGGTGGTGGTGGTGCTGCTCCAGCAGCTGCTGAGGCAAAGAAAGAGGAGAAGGTGGAGGAGAAAGAGGAATCTGATGATGTATGTTTTTTGTTTCCCCTGCTGTTTCATTCATCTTTATCTATTCTAATTATGACATGCCATGTATGCACTAGAAATGCTTCTAAACTTGTAGTTGGTTGCTGA 429 0.4732 MKVIAAYLLAVLGGNTSPSADDIKNILGSVGAEADDDRIELFLSEIKGKDIVEVIAAGREKLASVPAGGGGGGVAVAAAPGGGGGGAAPAAAEAKKEEKVEEKEESDDVCFLFPLLFHSSLSILIMTCHVCTRNASKLVVGC. 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05206 142 CDD Ribosomal_P2 1 64 IPR044076 GO:0002182|GO:0003735|GO:0022625
Seca8g05206 142 MobiDBLite consensus disorder prediction 81 100 - -
Seca8g05206 142 FunFam 60S acidic ribosomal protein P2 1 59 - -
Seca8g05206 142 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 110 IPR044076 GO:0002182|GO:0003735|GO:0022625
Seca8g05206 142 Gene3D - 1 59 IPR038716 -
Seca8g05206 142 Hamap 50S ribosomal protein L12 [rpl12]. 2 114 IPR027534 GO:0003735|GO:0005840|GO:0006414
Seca8g05206 142 Pfam 60s Acidic ribosomal protein 17 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05206 Seca-Chr8 142284605 142286741 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05206 1 70 Cytoplasmic Ribosomal Protein Gene Family AT2G27710 72.857 7.47e-31 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05206 K02943 - jre:118348482 119.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05206 8 142284605 142286741 Seca8g05206 8 142284605 142286741 ECH