Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05193 ATGGCGGAAGAACATCGATGCGAAGCTCCCGAAGGCCACCGACTCTGCGCCAACAACTGCGGCTTCCTCGGTAGCCCAGCCACCATGAATCTCTGCTCCAAATGCTACGGTGACATACGTTTGAAGGAACAAGAAGAAGCATCTACCAAATCCACCATTGAAACCGCTCTCTCTTCTGCCGCCTCCTCCGTCGCGTCGGCGGCGGCTATCGCTTCGCCGCCGCCGTCCACGTCATCTCCGTCGACGGCTGCTGTTGAATCAATCAAATCCCTCCCTCCTCCGATGGCGTTGACGGAGGTCGCGTCGAGCTCTGTGGCTGCACCTCCGGTTCAACCGAACCGGTGCGCGTCGTGCAGGAAGCGCGTGGGATTGATGGGGTTCAAGTGCAGGTGCGGGGTCACTTTTTGTGGGGCCCACAGGTACCCGGAGAGGCACGCGTGCAGCTTCGATTTTAAGACGGTGGGACGCGAGGAAATTGCTCGGGCAAACCCTGTGATCAGAGCGGAGAAGCTGCAGAGGATTTGA 525 0.5924 MAEEHRCEAPEGHRLCANNCGFLGSPATMNLCSKCYGDIRLKEQEEASTKSTIETALSSAASSVASAAAIASPPPSTSSPSTAAVESIKSLPPPMALTEVASSSVAAPPVQPNRCASCRKRVGLMGFKCRCGVTFCGAHRYPERHACSFDFKTVGREEIARANPVIRAEKLQRI. 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05193 174 PANTHER AN1-TYPE ZINC FINGER PROTEIN 13 174 - -
Seca8g05193 174 MobiDBLite consensus disorder prediction 68 86 - -
Seca8g05193 174 Pfam AN1-like Zinc finger 115 151 IPR000058 GO:0008270
Seca8g05193 174 SUPERFAMILY AN1-like Zinc finger 103 169 IPR035896 -
Seca8g05193 174 ProSiteProfiles Zinc finger AN1-type profile. 109 155 IPR000058 GO:0008270
Seca8g05193 174 Gene3D - 94 170 IPR035896 -
Seca8g05193 174 Pfam A20-like zinc finger 14 36 IPR002653 GO:0003677|GO:0008270
Seca8g05193 174 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Seca8g05193 174 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Seca8g05193 174 FunFam Zinc finger AN1-type containing 6 93 170 - -
Seca8g05193 174 SMART AN1_Zf_4 115 152 IPR000058 GO:0008270
Seca8g05193 174 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 59 - -
Seca8g05193 174 MobiDBLite consensus disorder prediction 68 87 - -
Seca8g05193 174 Gene3D - 1 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05193 Seca-Chr8 141972709 141973233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05193 1 174 C2H2 Transcription Factor Family AT3G52800 50.820 2.47e-54 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05193 - - gmx:100813749 238.424