Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05171 ATGGCTCTATGTCTCTCCCTCTGTCTCTATGGACTCGACGCATCTGCCTCCGTCTCAGTGGACACCATCTCCGTCGAGCTCTGCACTCGCACAGTCGTGCTCTGCTTCCACCATTCTGCGCTTCTAGTTTTGTCAAAGAACCGCAGGGCTAGATGGAAGACCAAGCAACTTGAGAGGGATTATGATGTTATCAAGGCTTCCTATGATTCCCTACTTTCAACATATGATTCTATTACGAAGGAGAATGAGAAACTCAAATCTGAGATTCAGAAAATGGCAGCCTCTAGTTTTTGGGGCATAACTCTTAAGGGACTTAACCAAATTGAAGCTTTGATAATTTACCATATGGGAAAGGAAGCTAGACTGTCAAAATCTAGAACAAGCAAAATATCTTGGATCAGAATCAAGGCTGGTGCTTTGATGCTTGCCGACAATGGCATTTGTTGCATTGATGAATTTGACAAGATGGACATCAAAGATCACGTAATTGTTTTTTTACAACTTGGCCTAATTGCTTTTGTTTTCCCTTTTCTGATTTCAGTATAA 546 0.4176 MALCLSLCLYGLDASASVSVDTISVELCTRTVVLCFHHSALLVLSKNRRARWKTKQLERDYDVIKASYDSLLSTYDSITKENEKLKSEIQKMAASSFWGITLKGLNQIEALIIYHMGKEARLSKSRTSKISWIRIKAGALMLADNGICCIDEFDKMDIKDHVIVFLQLGLIAFVFPFLISV. 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05171 181 Coils Coil 68 95 - -
Seca8g05171 181 ProSitePatterns MCM family signature. 146 154 IPR018525 GO:0003677|GO:0005524|GO:0006260
Seca8g05171 181 Pfam MCM P-loop domain 129 164 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca8g05171 181 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 46 95 IPR045224 GO:0003700
Seca8g05171 181 Gene3D - 117 165 IPR027417 -
Seca8g05171 181 Pfam Homeobox associated leucine zipper 55 94 IPR003106 GO:0006355|GO:0043565
Seca8g05171 181 ProSiteProfiles MCM family domain profile. 134 164 IPR001208 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05171 Seca-Chr8 141710301 141714158 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05171 46 89 Homeobox Transcription Factor Family AT3G01470 70.455 4.94e-17 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05171 K09338 - egr:104422596 82.0333