Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05162 ATGATCAATGTTGCTCTTACCAACAGCAATCACAACATCATTCCCATTTCCACTTCCACAATGCCAATATCATCCTCACTCTCATCATCATCATCCATTTTCCTAAAGCCTCGCCTTCTCCAATTCCAATCTCAATCCCATTCCCAATCCCAATTACACTTCCAATCCCAATTCCACCCTCCCAAGCACCTTTCCCTGAAAATACAGAGCTCCACCGCCACAAGAACCACCCACACCTTGCAATTCCTCAAACCTTACCTCCTCTCACAGCACAAGCCAATCCTATGTGGCTGGCTTTGCAGCGCCATATCCGTTTACTCCCTATCTAACCTTGTTTCCAAATTCTCAACGATCACTACTGCCACCACCATCGACGCCACCGCACAGGGCTTCGCGCTTGGGGGTTTGGTCCTTTCTCGCTTAATCGCCACTTACGCACAACATGCGCTTCTCTGGGAAGCTTCCCTCAACGCCGTTTACAACCTTCGCGTTCACGTTTTCGACCGCGTGCTGCGCAGGGAGCTCGCCTATTTCGAAGCCAACGACGCCGTTTCGGCTGGTGACATTGCCTATCGAATCACCGCTGAAGCTTCTGACGTTGCCCTTACCTTGTACGCCCTTCTAAATACCATAGTACCCAGTACTCTGCAGTTGTCGGCAATGATAATGCACATGTTGGTTATAAGTCCGGTCCTTTCTTTGATTTCAGCCATAGTTATTCCTTGCATGGTTCTAGCTGTTGCCTTTCTTGGTCAAGAACTTCGCAAGATATCTAAAAAGTCACATCTTAGCGTGGCTGCTCTCTCAGCATATCTAAATGAGATGCTGCCAGCAATTCTCTTTGTGAAAGCAAACAATGCAGAAGTGTGTGAAAGTGCCAGGTTTAAGAGACTGGCTCTGATGGACTACTCTGCAAAGCTGAACAAGAAAAGGATGAAAGCAGTCATTCCACAGGTTGTACAAGCTATTTATTTTGGAGTTCTTTCCATACTTTGTGCTGGTTCACTGGTGATTTCAAGAGGTTCATTTGATCGATATAGCTTGGTTTCATTCGTGACATCATTGCTTTTCTTGATTGAGCCAATCCAGGATGTAGGGAAAGCTTACAATGAATGGAGGCAGGGAGAACCAGCTGTTGAACGCTTGTTTGCTATGACCAAGTTCAAAAATAAGGTGGTTGAGAAGCCAGATGCTGTTGATTTGGACCATGTTACAGGGGACCTGAAATTCTGTGATGTCTCCTTTAAGTACAATGATGGCATGCCACTTGTTTTAAATGAATTGAATCTTCACATTAGGAATGGAGAGATAGTTGCTATCGTGGGTCCTTCTGGTGGAGGGAAAACAACACTTGTAAAACTGCTGCTTCGGCTTTATGATCCTATATCTGGTTCTATACTGATTGATAACCATAACATCCAAAACATTCGGTTGCAAAGTTTAAGAAGACATGTTGGTGTTGTTTCTCAAGATATAGTAAGTCACTCATCCCTTTCTATTCTTCCTACACTTTTTTCAGGTACAGTTGCTGAAAACATTGGTTATAGGGATCTGACAACTAAAATTGACATGGAGAGGGTGAAGCATGTAGCTCGAACTGCTCATGCAGATGAGTTTATTAAAAAACTTCCAGAAGGATACAAAACCAAGATTGGACCAAGGGGCTCAACTTTAAGCGGAGGCCAAAGGCAAAGGCTGGCTATTGCAAGGGCTTTCTACCAAAACCCTTCTATATTAATTCTTGATGAGGCAACTTCTGCCTTGGATAGTAAATCTGAGTTATTAGTGAGACAAGCTGTAGAACTTTTGATGGAAAATCGCACAGTGCTTGTGATCTCCCATCGCTTGGAAACAGTTCTGATGGCTAAACGAATATTCCTTTTGGATAATGGGAAGCTAGAAGAGCTGCCTCGATCAACTATGTTGAACGGGCACATGAATTCATTGCTCTCATCTGGGCTTGTTATTTGA 1971 0.4399 MINVALTNSNHNIIPISTSTMPISSSLSSSSSIFLKPRLLQFQSQSHSQSQLHFQSQFHPPKHLSLKIQSSTATRTTHTLQFLKPYLLSQHKPILCGWLCSAISVYSLSNLVSKFSTITTATTIDATAQGFALGGLVLSRLIATYAQHALLWEASLNAVYNLRVHVFDRVLRRELAYFEANDAVSAGDIAYRITAEASDVALTLYALLNTIVPSTLQLSAMIMHMLVISPVLSLISAIVIPCMVLAVAFLGQELRKISKKSHLSVAALSAYLNEMLPAILFVKANNAEVCESARFKRLALMDYSAKLNKKRMKAVIPQVVQAIYFGVLSILCAGSLVISRGSFDRYSLVSFVTSLLFLIEPIQDVGKAYNEWRQGEPAVERLFAMTKFKNKVVEKPDAVDLDHVTGDLKFCDVSFKYNDGMPLVLNELNLHIRNGEIVAIVGPSGGGKTTLVKLLLRLYDPISGSILIDNHNIQNIRLQSLRRHVGVVSQDIVSHSSLSILPTLFSGTVAENIGYRDLTTKIDMERVKHVARTAHADEFIKKLPEGYKTKIGPRGSTLSGGQRQRLAIARAFYQNPSILILDEATSALDSKSELLVRQAVELLMENRTVLVISHRLETVLMAKRIFLLDNGKLEELPRSTMLNGHMNSLLSSGLVI. 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05162 656 Pfam ABC transporter transmembrane region 101 361 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca8g05162 656 Pfam ABC transporter 425 586 IPR003439 GO:0005524
Seca8g05162 656 Gene3D - 400 652 IPR027417 -
Seca8g05162 656 SUPERFAMILY ABC transporter transmembrane region 82 386 IPR036640 GO:0005524|GO:0016020
Seca8g05162 656 SMART AAA_5 434 632 IPR003593 GO:0016887
Seca8g05162 656 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 99 374 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca8g05162 656 Gene3D ABC transporter type 1, transmembrane domain 77 387 IPR036640 GO:0005524|GO:0016020
Seca8g05162 656 ProSitePatterns ABC transporters family signature. 558 572 IPR017871 GO:0005524|GO:0016887
Seca8g05162 656 FunFam ABC transporter ATP-binding protein 401 652 - -
Seca8g05162 656 FunFam ABC transporter related 81 388 - -
Seca8g05162 656 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 95 635 IPR039421 -
Seca8g05162 656 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 397 636 IPR027417 -
Seca8g05162 656 CDD ABC_6TM_exporters 130 382 - -
Seca8g05162 656 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 408 655 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05162 Seca-Chr8 141594089 141606646 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05162 398 653 Calmodulin-binding Proteins AT2G36910 42.085 9.40e-54 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05162 K02021 - gmx:100788075 897.116