Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05153 ATGCTAGGGAAAAAGATGGTATCTTTGAAGAAACTAGCCAAGAAGGTGAAGGCTGTTGGTGGAGCTGACTCTGACCCTCCTTACCATGAATGTTTGCTCAAGGGATATGAGGAAGAATCTCCCTCCAGCACAACCCCAACTGGTTTTTTTGCACTTTATGTGGGGGAAGAGCGTCAGAGATATGTGGTCCCAACCAGCTACCTTAATCACCCTTTATTCAAGATACTGCTGGAGAAGGCATACAATGAATTTGGGTTTGCACAGAGGAATGGCCTGGTTGTTCCATGCAGTGTTTCCACATTTCAGGAGGTGGTAAATGCTATAGAATGCAACAATGGCATGTTTGACTTAGGCAAGATTTTTGAAGATTTTGTTTAA 378 0.4339 MLGKKMVSLKKLAKKVKAVGGADSDPPYHECLLKGYEEESPSSTTPTGFFALYVGEERQRYVVPTSYLNHPLFKILLEKAYNEFGFAQRNGLVVPCSVSTFQEVVNAIECNNGMFDLGKIFEDFV. 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05153 125 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 33 104 IPR003676 GO:0009733
Seca8g05153 125 Pfam Auxin responsive protein 24 107 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05153 Seca-Chr8 141543678 141544055 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05153 3 111 Calmodulin-binding Proteins AT5G20810 40.541 1.27e-21 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05153 K14488 - gmx:100790208 216.083