Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05126 ATGTCCATAAACCACTACTCAATGGACCTTCCAGAAACGACACTATGGTGGACTCAACAGCAACAACAACCCATGTTAGTGGAACCAATCCAAAACCCTTCCACTTCTTGGCCCCTCCAACAACACCACCACCAACCCACATGGTTCACTACTCCTCCAGACCCACCTTTACAATACCCCACCCATTTCAACCTCAACAATCAAAACGAAGATGAAGAAGAAGATGATGATGAAGAAAACGACACTAACAACAACAACGACCAAGCCACCACCACAACAACACAGCAAGAAGAAGAGAAGGAACCCATGTTCGAGAAGCCATTAACCCCCAGTGACGTGGGAAAGCTAAACCGTCTCGTAATCCCGAAACAACACGCGGAGAAGTACTTCCCTTTGGGTGCTTCTGGTGGCGGCGGTGACTCGGGCGAGTGCAAGGGGCTGCTACTGAGTTTCGAGGACGAGTCAGGGAAGTGTTGGCGGTTCCGTTACTCGTATTGGAACAGCAGCCAGAGCTACGTTTTGACCAAAGGTTGGAGTCGTTACGTGAAGGACAAACGACTCGACGCAGGCGACGTCGTTTTGTTCCAGCGCCACCGTGTCGACGCTCAGAGGCTCTTCATTAACTGGAGGAGAAGGAAACCAAGTGGCACACCGCCGGCGCACGTTAGCAGGATGGTGGGACACGGCAAGGGCAGTAGTGATGGGTATAGCAATAGTAAGAATGAGGGTATTGCTGGTGGTGTGGGCGTGGGGTGGACCAGAGGGTTCTACTCTGCGCACCCTTATCCTACGCATCACCCCTTGCCATACCAACATGACTGTCTTCATGCAGGTAGAGGGTCCCAAGGTGAGAAACCTGTGGGGAAGAGTTCAAGTTCAAGTTCAAGTTCTAGTTCGAGTTCAAGGGTACTTAGGCTGTTCGGAGTCAACATGGAATGCCAACCTGAACATGAATCTGGACCCGAATGCTCCTACAATATGCCATCAAGCGAGGGCACAGATTTCTACCACCATCATCAACCACCTAACTCTAATCCTCACCCTCACATGGTACGTCACCAATCATACTACCACTAG 1077 0.5088 MSINHYSMDLPETTLWWTQQQQQPMLVEPIQNPSTSWPLQQHHHQPTWFTTPPDPPLQYPTHFNLNNQNEDEEEDDDEENDTNNNNDQATTTTTQQEEEKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGASGGGGDSGECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFQRHRVDAQRLFINWRRRKPSGTPPAHVSRMVGHGKGSSDGYSNSKNEGIAGGVGVGWTRGFYSAHPYPTHHPLPYQHDCLHAGRGSQGEKPVGKSSSSSSSSSSSSRVLRLFGVNMECQPEHESGPECSYNMPSSEGTDFYHHHQPPNSNPHPHMVRHQSYYH. 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05126 358 MobiDBLite consensus disorder prediction 214 240 - -
Seca8g05126 358 MobiDBLite consensus disorder prediction 270 301 - -
Seca8g05126 358 MobiDBLite consensus disorder prediction 69 83 - -
Seca8g05126 358 MobiDBLite consensus disorder prediction 285 301 - -
Seca8g05126 358 MobiDBLite consensus disorder prediction 315 358 - -
Seca8g05126 358 SUPERFAMILY DNA-binding pseudobarrel domain 100 212 IPR015300 -
Seca8g05126 358 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 54 321 IPR044800 GO:0003700
Seca8g05126 358 ProSiteProfiles B3 DNA-binding domain profile. 104 213 IPR003340 GO:0003677
Seca8g05126 358 MobiDBLite consensus disorder prediction 30 48 - -
Seca8g05126 358 MobiDBLite consensus disorder prediction 30 112 - -
Seca8g05126 358 SMART B3_2 104 213 IPR003340 GO:0003677
Seca8g05126 358 FunFam B3 domain-containing protein 97 222 - -
Seca8g05126 358 Gene3D - 91 218 IPR015300 -
Seca8g05126 358 CDD B3_DNA 102 203 IPR003340 GO:0003677
Seca8g05126 358 MobiDBLite consensus disorder prediction 323 340 - -
Seca8g05126 358 Pfam B3 DNA binding domain 104 212 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05126 Seca-Chr8 141249959 141252264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05126 97 337 RAV Transcription Factor Family AT5G06250 50.000 6.80e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca8g05126 B3 1.8e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05126 K09287 - gmx:100795470 373.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05126 8 141249959 141252264 Seca8g05126 8 141249959 141252264 ECH
Seca8g05126 8 141249959 141252264 Seca2g04867 2 135104379 135106460 PCT