Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05118 ATGCAGGCCTTCTCCCTGGATTTCAACTTAAGGTCTCACATGAAAACACATTCACAAGAGAACTATCATATCTGCCCATACCCAGATTGTGGAAGGATATATGCCCACGAATACAAGCTGAAGAATCATGTTGCACCTCATAATGAAAAGAATGCATCAGTTGAGGTGATCAAGTACACTCCACCTTTAGAGAAGCAAACAAAAACTACAGAACCTTCTGGAGGGGCATATGGTTATGCATCATCTGATCGCCCCTATGCATGTCCTCATGAAGGATGTGAAAAAGCTTACATCCATGAATACGAGCTTAGACTCCATTTGAAGAGGGAACATCCGGGGCATATGTCTGATGAAAATACCGAGCATTCTCAGGTTAATGCTGACAATGAAATGGATGAAGCAAGTGACCAAGATGCCTACGGTGGGAAATGGTCAAATGGTAAGATTCAGAAGCAAAGTAGTGTCAAACCAAACCTCAAGTTGCCTCCTTCCAAAATTGCAAAACGCAAAGGGTCCACGGCCACTCTAACTGTGATTAACAAACCTTTGCCTGTGAAAGATGGAACATTTGATGAAGAAGATAGCGAAGAAACAGAAGAAGATCGAAATAATGTTGAAGATGGTTAG 627 0.4195 MQAFSLDFNLRSHMKTHSQENYHICPYPDCGRIYAHEYKLKNHVAPHNEKNASVEVIKYTPPLEKQTKTTEPSGGAYGYASSDRPYACPHEGCEKAYIHEYELRLHLKREHPGHMSDENTEHSQVNADNEMDEASDQDAYGGKWSNGKIQKQSSVKPNLKLPPSKIAKRKGSTATLTVINKPLPVKDGTFDEEDSEETEEDRNNVEDG. 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05118 208 MobiDBLite consensus disorder prediction 130 208 - -
Seca8g05118 208 Gene3D Classic Zinc Finger 1 60 - -
Seca8g05118 208 Gene3D Classic Zinc Finger 63 130 - -
Seca8g05118 208 FunFam Zinc finger transcription factor YY1 61 128 - -
Seca8g05118 208 ProSiteProfiles Zinc finger C2H2 type domain profile. 23 52 IPR013087 -
Seca8g05118 208 SMART c2h2final6 23 47 IPR013087 -
Seca8g05118 208 SMART c2h2final6 86 111 IPR013087 -
Seca8g05118 208 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 116 IPR013087 -
Seca8g05118 208 ProSitePatterns Zinc finger C2H2 type domain signature. 88 111 IPR013087 -
Seca8g05118 208 SUPERFAMILY beta-beta-alpha zinc fingers 81 109 IPR036236 -
Seca8g05118 208 ProSitePatterns Zinc finger C2H2 type domain signature. 25 47 IPR013087 -
Seca8g05118 208 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 2 154 - -
Seca8g05118 208 SUPERFAMILY beta-beta-alpha zinc fingers 3 49 IPR036236 -
Seca8g05118 208 MobiDBLite consensus disorder prediction 190 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05118 Seca-Chr8 141131787 141132757 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05118 1 186 C2H2 Transcription Factor Family AT4G06634 59.391 8.62e-71 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca8g05118 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05118 - - gmx:100811480 347.051