Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05113 ATGCTGCATTCTTTAGCTCGTCAAAAGAAAGCTGTGAAGATTTTCCCCAGGCCTACAGCTGGACCTCTTAGGCCTATTGTTCATGGACAAACCTTGAAATACAACATGAAAGTCAGAGATGGTAGAGGATTTTCTCTTGAAGAACTGAAGGTAAAATTCGCTTTTTGTATTATGATAGATGGATGGAACCAATCATTGGAAAGCCTGCAAGCTAATGTGCAGAGGCTGAAACATACAAGGCCAAGTTGGTTGTCTTCCCAAGATGTGCACGCAAGGTTAAGGCTGGTGATTCTATGCCTGAGGAACTTGCAAATGCCACACAAGTCCAGGGTTCATATAATAGTTGTTGCAAGGCGATTTTTGTTCGAAATTAGCTTAATCTAA 384 0.4141 MLHSLARQKKAVKIFPRPTAGPLRPIVHGQTLKYNMKVRDGRGFSLEELKVKFAFCIMIDGWNQSLESLQANVQRLKHTRPSWLSSQDVHARLRLVILCLRNLQMPHKSRVHIIVVARRFLFEISLI. 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05113 127 PANTHER 60S RIBOSOMAL PROTEIN L13 5 79 IPR001380 GO:0003735|GO:0005840|GO:0006412
Seca8g05113 127 Pfam Ribosomal protein L13e 5 78 IPR001380 GO:0003735|GO:0005840|GO:0006412
Seca8g05113 127 Coils Coil 59 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05113 Seca-Chr8 141108335 141109687 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05113 5 77 Cytoplasmic Ribosomal Protein Gene Family AT5G23900 69.512 1.72e-30 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05113 K02873 - gmx:100305489 107.457