Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05111 ATGTCTGGCTCCAGAAGAAAGCTAGTTTTGAACTCTGTTTCCGTGAACCTTGGCTGTGGAACCTGCAGAAGGCGACCAAAGCTTGGTTTCATATTCAACCCAAAACCTAAGCCCAAGAACCCCACCTACCAAAAACGCAAGCTTTACTCACATTCTTCCGAAGACAGAGATGACTCTGCAACCAGCACCACCACCAACACTACCCCAACCACTAACACCACATTCTCTCCTTGCTACGTTGATTCCTCACAGTTTTGTGACTATGAAAAGTCCTCAGGGACAGTCAAAGGATTCGGAAGAGTTGGAAGTGAAGGCGTGGCTGTAGAGAAAGATTCCGATGATCCTTATCTGGATTTCAGGCAATCCATGCTTCAAATGATATTGGAGAATGAGATATACTCAAAGGATGATCTGAGGGAGCTTCTGAATTGCTTTCTTCAGCTGAATTCAGCGGAACACCATGGGATTATTGTCAGAGCTTTCACTGAGATCTGGAATGGGGTCTTCTCTGTGAGGTCCAGTTCACCCAGGTTCCACCTGAACCATAAGTCACGTGACTTCTAG 564 0.461 MSGSRRKLVLNSVSVNLGCGTCRRRPKLGFIFNPKPKPKNPTYQKRKLYSHSSEDRDDSATSTTTNTTPTTNTTFSPCYVDSSQFCDYEKSSGTVKGFGRVGSEGVAVEKDSDDPYLDFRQSMLQMILENEIYSKDDLRELLNCFLQLNSAEHHGIIVRAFTEIWNGVFSVRSSSPRFHLNHKSRDF. 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05111 187 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 49 170 IPR038933 GO:0045892
Seca8g05111 187 Pfam Transcriptional repressor, ovate 112 168 IPR006458 -
Seca8g05111 187 ProSiteProfiles OVATE domain profile. 108 167 IPR006458 -
Seca8g05111 187 MobiDBLite consensus disorder prediction 59 73 - -
Seca8g05111 187 MobiDBLite consensus disorder prediction 30 73 - -
Seca8g05111 187 NCBIfam uncharacterized plant-specific domain TIGR01568 106 166 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05111 Seca-Chr8 141084181 141084744 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Seca8g05111 Ovate 3.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05111 - - pvu:PHAVU_007G269800g 239.195