Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05109 ATGTCCGGCGGCGCTGGAGCTTCCGACCGTCGCGTCTCGCCGCCGAGGGAGGTTGCCGGTGCCCGGAACCGGCCACCGCTGAAACGCCACCTGGCCTTCGCATCGACGAAGCCGCCATTTGCCCCGCCGGATGATTACCACAGCTTTGCCTCAGTCGAGTCCAGGAGAGTCGCCGATCACGAGCCTGAAGCTGTCGTTGTTAGATCTCCGTTCATCAAGTCTGAGTGCATGGTAATGCTTGCTTATGAACTTTTTCATTTGTCGCCTAATTTCATGAAGCGGAAGAGTGGAATCAATGACAATGAAGGCGACTCACAGAAGTGGAGTAACAGCCCTGGATACACTAACATAATAAGCAGTCCCTTCAAAACTCCTGTGTCTGCAAAAGGGGGAAGGACACATAATAAGTCAAAGGTTTCCAAAGAAGGCAGATCATGTCCTCCGACACCCATCTCAAATGCTGGTTCCCCTTCTCCTCTTACTCCTGCTGGTAGCTGTCGTTATGATAGTTCCTTAGGTCTCTTGACAAAAAAGTTCATCAATTTGGTTAAGCATGCAGAGGATGGTATTCTTGACCTAAATAAAGCAGCAGAAACCCTGGAGGTCCAAAAGAGGAGGATATATGACATTACTAATGTCTTGGAAGGCATTGGTCTCATCGAAAAGAAGCTTAAGAACAGAATACATTGGAAGGGAATTGAATCTTCTACTTCTGGTGAGGTGGATGGTGATATCTCTGTGCTCAAGGCAGAAGTTGAACAACTTTCTTTGGAAGAGCACAAATTAGATGATCAAATAAGAGAAATGCAAGAAAGGCTGAGAAGTTTGAGTGAAAATGAAAACAACCAGAAGTTTTTCTTTCTATTAATACTAGTGCATTTCTGCAAGCAGAATGAAACTCTAATAGCAATTAAAGCTCCACATGGAACCACCCTTGAAGTCCCTGAACCTGAGGAAGCTGTCGACTATCCACAGCGGAGATATAGAATCATTCTTAGAAGCACAATGGGTCCCATTGATGTCTATCTTATCAGTCAATTCGAAGAGAAATTTGAAGAGGTTAATGGTGCTGAGCCCCCCATGAGCATCCCACTTGCTTCAAGTTCAGGGTCCAATGAGCAACCAGTGGCAGAAATGGTTCCTGCTGAGTGCAGTGGACAAGGGCTTGAACCCCAAGCTCAGCTCTCTTCTCATGCATATTCTGATCTAAATGCTTCACAAGAGTTTGCAGGGGGCATGATGAAGATTGTCCCTTCGGATGCTGATAATGATGCAGATTATTGGCTTCTGTCAGATGCTGACGTTAGCATAACAGATATGTGGAGGACAGATTCTAGTGTTGATTGGAATGGGGTGGACATGCTTCATCCTGACTTTGGAATCATCTCAAGGCCGCAAACTCCATCATCTGGGTTTGCTGAAGCACCATCCACAGTAGCTAACTCTAATCAGAGGTGA 1458 0.4609 MSGGAGASDRRVSPPREVAGARNRPPLKRHLAFASTKPPFAPPDDYHSFASVESRRVADHEPEAVVVRSPFIKSECMVMLAYELFHLSPNFMKRKSGINDNEGDSQKWSNSPGYTNIISSPFKTPVSAKGGRTHNKSKVSKEGRSCPPTPISNAGSPSPLTPAGSCRYDSSLGLLTKKFINLVKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIHWKGIESSTSGEVDGDISVLKAEVEQLSLEEHKLDDQIREMQERLRSLSENENNQKFFFLLILVHFCKQNETLIAIKAPHGTTLEVPEPEEAVDYPQRRYRIILRSTMGPIDVYLISQFEEKFEEVNGAEPPMSIPLASSSGSNEQPVAEMVPAECSGQGLEPQAQLSSHAYSDLNASQEFAGGMMKIVPSDADNDADYWLLSDADVSITDMWRTDSSVDWNGVDMLHPDFGIISRPQTPSSGFAEAPSTVANSNQR. 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05109 485 Pfam E2F transcription factor CC-MB domain 248 345 IPR032198 GO:0046983
Seca8g05109 485 PANTHER TRANSCRIPTION FACTOR E2F 95 447 IPR015633 GO:0000978|GO:0006357
Seca8g05109 485 MobiDBLite consensus disorder prediction 465 485 - -
Seca8g05109 485 Coils Coil 245 279 - -
Seca8g05109 485 MobiDBLite consensus disorder prediction 146 162 - -
Seca8g05109 485 SUPERFAMILY E2F-DP heterodimerization region 245 346 IPR037241 -
Seca8g05109 485 CDD E2F_DD 245 346 IPR032198 GO:0046983
Seca8g05109 485 MobiDBLite consensus disorder prediction 1 29 - -
Seca8g05109 485 FunFam E2F transcription factor 1 161 234 - -
Seca8g05109 485 Pfam E2F/DP family winged-helix DNA-binding domain 169 232 IPR003316 GO:0005667|GO:0006355
Seca8g05109 485 SMART E2F_TDP_2 167 232 IPR003316 GO:0005667|GO:0006355
Seca8g05109 485 MobiDBLite consensus disorder prediction 121 162 - -
Seca8g05109 485 SUPERFAMILY "Winged helix" DNA-binding domain 167 230 IPR036390 -
Seca8g05109 485 Gene3D - 161 234 IPR036388 -
Seca8g05109 485 Gene3D - 239 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05109 Seca-Chr8 141054876 141059746 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05109 25 485 E2F-DP Transcription Factor Family AT2G36010 53.971 6.27e-158 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Seca8g05109 E2F_CC-MB 1.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05109 K06620 - gmx:100811762 746.117