Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05096 ATGGATAATACAGATGATCTTTCGACTGTTAAGTTGGATGATGAGAATGACCCTAGTTATGATGTTGGTCGTGATGATAGTATTAGTGCAGATCCCTCAGATATTAGAGAAGAGAGCCAGGCTGCAGATATGGATGTTGGAGATGGGCAGTATAAGAGGATAACAAATCTGACTAGTGATGATGTAATGGGTTTGGAGTTTGTAACTCAGCATGCTGCTTACAAATTTTATGAGGATTATGCTAAAGCCCATGGTTTTGTAGTAAGGAAAGATGATATAAGGAAGGATTTTAGGGGTAACACTGTGATGCGACAATTTGTATGCAATAGACAAGGATTGAGAAACAAAAAACATTTCATGAGGGTAGACAGGAAAAGGGAGCACAGAGCAATTACCCGAACAAATTGTGGAGCTAAGCTTCGGGTACGTTTCAATCGCAAGAAATCAAAATGGATAGTGGTGTCTTTTGAGGAGGCACATAATCACGAGCTAACCCCTTCAGTATATGTGCATTTATATCCTTCTTATCGTAAAATGAGTGATGCAGATAAAGCTCAGGTTGATAGTTTACGTGCCCATGGTGTTAGAACTTGTCACATTATTGGGTACATGTTGGCCCAAAAAGGCGAATATGGGGGTTTGGGTTTTTGTAAAACAGATGTATACAACTATATTGACAACAAAAGTCGTGTGCAGGTAAAAGATGGTGATGCAATTGCTGCTTTAAGCTATTTAGCAGGTAAGGCACAACATGATCCAACATTATTTGCACATAGCATTGTTGAATTCATGCATAGCTTTGAACAAGCCTTGAGGGAATACAGGCACAATGAATTGACTGCGAATTTTAAGTCATTTTTTTTTGAACCAGTGTTGACAACATGTTTGCAGAAAATTGAGAGAGACGCTTCAAAGATTTACACTTTGGAGATGTTCAAAGAAGTTAGGCAGGAGATTGATAAGGCTGGCGCCTTAATTGTTGTTGACCGAAATGTTAATGACAAGAAGTTTATGTTTACACTAAATCAGTATTGTAACCGTGGGCGTGAGATGCATGTTTTGTATGATGCTTCAGATAGCTCTTTTTCATGTGATTGTAGACTTTTTGAAATTCGTGGTATTCCATGCTCACATATATTTTGTGCCATGAAAAATGAGCATGTTGAATCCATTCCCACAAGTTTGATTTTGAAACGCTGGATGAAAACTGCCAAGAGTGATTTCATTAATTCTATTGAATCTAGGGAAGTTCATTCTGATGTGTTGGATGGAGCTCGGTTATCAGCCTTAACTTCTTATTCTTCTAATTTTGTTAAGGTTGCTTATGAAAATAAAGGGTGCTTCAATGAGATAGTGGATGATCTTTTTAAGCTGACTCTGAAGTATCAGAAGAAAACGATCTCTAATGGTCAAAATTCGTCATCTTCATTCATTATTAGTGATCTGACTATCGTTAAAACTAGAGGTGCTCCGAAGAAGAAAAAGTACGCCAAGAAGAGGAGGAGACACTGTTCTAATTGCTCTGGAACATGA 1533 0.379 MDNTDDLSTVKLDDENDPSYDVGRDDSISADPSDIREESQAADMDVGDGQYKRITNLTSDDVMGLEFVTQHAAYKFYEDYAKAHGFVVRKDDIRKDFRGNTVMRQFVCNRQGLRNKKHFMRVDRKREHRAITRTNCGAKLRVRFNRKKSKWIVVSFEEAHNHELTPSVYVHLYPSYRKMSDADKAQVDSLRAHGVRTCHIIGYMLAQKGEYGGLGFCKTDVYNYIDNKSRVQVKDGDAIAALSYLAGKAQHDPTLFAHSIVEFMHSFEQALREYRHNELTANFKSFFFEPVLTTCLQKIERDASKIYTLEMFKEVRQEIDKAGALIVVDRNVNDKKFMFTLNQYCNRGREMHVLYDASDSSFSCDCRLFEIRGIPCSHIFCAMKNEHVESIPTSLILKRWMKTAKSDFINSIESREVHSDVLDGARLSALTSYSSNFVKVAYENKGCFNEIVDDLFKLTLKYQKKTISNGQNSSSSFIISDLTIVKTRGAPKKKKYAKKRRRHCSNCSGT. 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05096 510 PANTHER OS01G0519700 PROTEIN 259 455 - -
Seca8g05096 510 ProSiteProfiles Zinc finger SWIM-type profile. 349 387 IPR007527 GO:0008270
Seca8g05096 510 MobiDBLite consensus disorder prediction 1 47 - -
Seca8g05096 510 Pfam FAR1 DNA-binding domain 75 165 IPR004330 -
Seca8g05096 510 SMART 26again6 362 389 IPR006564 GO:0008270
Seca8g05096 510 MobiDBLite consensus disorder prediction 1 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05096 Seca-Chr8 140785461 140787632 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca8g05096 FAR1 4e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05096 - - ccaj:109792835 317.775