Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05091 ATGGCCGACAAGCAACCCCAACTGAACGGTGCCTACTACGGACCTTCCATTCCTCCGGCGGATCAACCTCGCCACCACCACCACCGCGGAAGAAGATGCTGTTGTTGCCTCTTCGGCATCATCTGGAAGCTCCTCTTGGTAATCATCATCTTCATTGTCCTTGTATTCATCATCTTCTGTGCCATATTCAACGTCACGGAAGCCAAACTCACTCAATTCAACTACACCAACAACCACATCCTAAACTACAACCTCGTCCTCAACTTCACGGCACGTAACCCCAACAAAAAACTGAACATCTACTATGACCAAGTGGAGGCGCACGCATACTACGAGGGAAGCAGGTTCGATTTAACGGACGTGATAACGTGGAAGAACTCGTTCCGGCAATACACGAAGAGCACGGATCGCATGAGTGGTGTTTTCTCTGGGCAACAAGTTGTGGTGTTTGATCAGGATCAGGTCTCTGTTTTCGAACGAGACAAGAGAGGTGGGGTTTTTGACATCGATGTGAAGCTTTACTTCAGGATTAGGTTCAGGCTTGGTGACTTCATAGGTGGAACTACAAAGGCCAAGGCCAAATGCGAGCTTAACGTTCCTTTCCGTTCTAATGGAACACCCATGGCTGACAAGCAACAGAACGCTGCAAACTACGACCCCTCCGTTCCGCCAGGGGAGCAACGGCGCCACCGTGGCAGAAGATGCTGTTGCTGCCTCTTTCGCATCTTGTGGTGGTTCCTCGTCTTCATCATCGTCTTGGCTGGCCTCGTGATCCTCGTCACATGGATCATCCTCCAACCCCGTTTCTTCAAATATCACGTGACGGAAGCCAAACTGACCCAATTCAACTACACCGCCAGCAGCAACACCCTCCGTTACAACCTCGTCCTCAACTTCACGGCCCGTAATCCTAACAAGAAGCTCAACATCTACTACGACAAAGTGGAGGCCCACGCATTCTATGAGGGAACAAGGTTCGGTTCAACGGACGTGATCACGTGGTTGAACTCGTTCCGGCAATACACGAAGAGCACGGACCGCATGAGCGGTGTTTTCTCGGGCCAGCATGTGATGGTACTTGATCGTGATCAGATCTCTGATTTGGAACGAGACGAGAGGGATGGGGTTTTTGACATCGATGTGAAGCTCTACTTCAGGATTAGGTTCAGGCTTGGTGACTTCATAGGCGGCGACATGAAGCCCAAGGCCAAATGTGCGCTTAAGGTTCCTTTCCGTTCTAATGGAACAGCGATGACTGCGTTTGAGCCCACCAAGTGCGATGTCAATTTCTGA 1293 0.5066 MADKQPQLNGAYYGPSIPPADQPRHHHHRGRRCCCCLFGIIWKLLLVIIIFIVLVFIIFCAIFNVTEAKLTQFNYTNNHILNYNLVLNFTARNPNKKLNIYYDQVEAHAYYEGSRFDLTDVITWKNSFRQYTKSTDRMSGVFSGQQVVVFDQDQVSVFERDKRGGVFDIDVKLYFRIRFRLGDFIGGTTKAKAKCELNVPFRSNGTPMADKQQNAANYDPSVPPGEQRRHRGRRCCCCLFRILWWFLVFIIVLAGLVILVTWIILQPRFFKYHVTEAKLTQFNYTASSNTLRYNLVLNFTARNPNKKLNIYYDKVEAHAFYEGTRFGSTDVITWLNSFRQYTKSTDRMSGVFSGQHVMVLDRDQISDLERDERDGVFDIDVKLYFRIRFRLGDFIGGDMKPKAKCALKVPFRSNGTAMTAFEPTKCDVNF. 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05091 430 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 208 416 - -
Seca8g05091 430 MobiDBLite consensus disorder prediction 206 227 - -
Seca8g05091 430 MobiDBLite consensus disorder prediction 206 220 - -
Seca8g05091 430 Pfam Late embryogenesis abundant protein 299 400 IPR004864 -
Seca8g05091 430 Pfam Late embryogenesis abundant protein 89 196 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05091 Seca-Chr8 140752408 140757969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05091 271 417 SNARE and Associated Proteins AT1G32270 33.775 5.26e-18 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05091 - - gmx:100795302 290.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05091 8 140752408 140757969 Seca8g05099 8 140816396 140827282 PCT