Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05078 ATGACGACCCTTGTCATGGAAGACCCTTGTCCGAAGTTCCTTTCCTTATTCTTCCTCTCACTTGCTTGTGTGGTTCTCTCTGACACTGACCCAAATGATGTAAAGATTCTGAACCAATTCAGAAAAGGGTTGAAGAACCCAGAACTGTTGCCATGGCCAGAAGAAGGAGGAGACCCATGTGGGAATCCTCCATGGAAATACATCTTCTGCAATGGCAACAGAGTCTCTCAGATTCAAACCAAAAACTTGAACCTTGTGGGTCCTCTGCCTCAGAACTTCAACCAACTCACCATGCTTGAGAATCTAGGCCTTCAGAACAACAAACTCAACGGTCCCTTACCATCTTTCAATGGCTTGTCGAAGCTAAAGTACGCGTTTTTGAACTACAACGAGTTTGAATCCATCCCTGAAGATTTCTTTGATGGGCTTGAGAGTCTTGAGGTTTTGGCATTGGATTACAACAGCAACCTCAATGCCACCACTGGTGGGTGGCAATTCCCTTCAAGTTTGCAGGGTTCAGCACAGTTGACCAATTTGTCTTGTATGAGTTGCAACTTGGTTGGTCCAATCCCTGATTTTCTGGGAAAAATGGTGTCTTTGTCGGTGTTGCAACTTTCCGGCAACAACTTAACCGGTGAGATTCCGGCAACGTTTAACGGTTTCCCTGCTTTGCAGATTCTATGGTTGAATAACCAGAAGGGTGGTGGCCTCACTGGTACTATTGACATGGTGGCAACAATGGTTTCGCTGACGAGTTTGTGGCTTCATGGGAACCAGTTCAAAGGGACCATTCCCGTGAAGATTGGGGATTTGACTTTTCTGAAGGATCTTGATCTCAATGGTAACCAGCTTGTTGGACTTATTCCTGATGCTTTAGGTAAAATGAAATTGGACCGTTTAGATTTGAACAATAACCACTTCATGGGTCCAATCCCAAATTTTGCAACACCTAAAGTCACTTTTGAATCGAATAATTTTTGTCAATCTAAACCTGGGGTTCTGTGTTCCTTTGAAGTCATGATGCTGCTGGAATTTCTTGGTGGGTTGAATTATCCTTCAAATCTGGTTAATTCATGGACTGGTAATAACCCATGTGATGGGCCATGGTTGGGGATAAAGTGCAATGCTAATGGAAAGGTGTCAATGATTATTTTGTCTAACTTTAATCTTAGTGGTACACTGAGTCCTTCTGTTGCAAACTTAGATTCACTTGTTGAAATCAGGTTGGGTGGTAACAGTCTCAGTGGTGAAATACCCAGCAACTGGACTAGCTTGAGATCCTTGACACTGTTGGATCTAAGTGGCAATAACATTTCCCCTCCCTTGCCAAATTTTAGTAAAAGCTTGAAACTTGTGATTGATGGGAATCCTCAGTTAATTCATGGCAGCCCAGAAGGTCCTTCATCAGGGACCGGGTCATCTTCTAGAAAGCCTGAACCTTCTTCACCTGATAATCCATCAGCAGACTCAAATTCCCATCCCAGTAATTCTCTTGAATCAAATAATTCCAAAAGGAAATACTTGGTTTCAGTTGTAGCTCCTATAGCAGGTGTTGCAGCTGCGGCATTAATGCTCATTCCTCTTTATGTATATTGTTTCAGGAAGAGAAAGGGTGCCTCCAATGGTCAAAGTTCACTGGTAATTCACCCTAGAGATCCATCTGGTTCAGACAATGTGGTAAAGATTGTTGTTGCTAATGATAGCAATGGAAGCATTTCCACAGTCACAGGCAGTGGGTCTGAGAATCTAAATGGAAATGGGGAGTCTCATGTCATTGAAGCTGGAAATCTTGTGATCTCAGTTCAAGTTCTTAGAAATGTGACCAAGAATTTTGCCCCAGAAAATGAGCTTGGACGTGGTGGATTTGGGGCTGTTTACAAGGGAGAATTGGATGATGGGACTAAAATTGCAGTAAAACGAATGGAAGCTGGTGTGATTAGCAGCAAAGCCTTAGATGAATTCCAGTCAGAAATTGCTGTTCTATCAAAAGTCAGACACCGCCATTTAGTGTCTCTTTTGGGTTATTCAGTTGAAGGTAGTGAGAGGCTTCTAGTTTATGAATATATGCCACAAGGGGCTCTCAGTATGCATCTTTTCCATTGGAAGAGCTTACAACTGGAGCCCCTCTCTTGGAAGAGGAGGCTCAATATTGCCTTGGATGTCGCTAGAGGAATGGAGTATCTTCACACTCTGGCTCACCAGAGCTTCATTCACAGAGATCTTAAGTCATCAAATATTTTGCTGGGGGACGACTTTAGAGCAAAAGTTTCAGATTTTGGATTGGTAAAACTAGCTCCTGATGGCAAAAGTTCTGTAGTGACCCGGCTTGCTGGTACATTTGGATACTTGGCACCAGAATATGCAGTGACAGGAAAAGTTACTACTAAAGCAGATGTTTTCAGCTTTGGTGTTGTGCTAATGGAGCTATTAACTGGATTAATGGCACTTGATGAGCATAGGCCTGAGGAAAGCCAATACTTGGCAGCATGGTTCTGGCATATAAAATCAGATAAGGAGAAATTAATGACTGCTATTGATCCATCCCTTGACATAAAGGAAGAAACATTTGATATCATCTCCATCATTGCTGAATTAGCTGGGCACTGCACTGCCAGAGAACCAAACCAACGGCCAGATATGGGTCATGCTGTGAATGTTCTGGCACCACTTGTTGAAAAATGGAAACCATTATATGATGACACTGAGGAGTATTCTGGCATAGATTATAGTCTTCCCCTTAACCAGATGGTGAAGGACTGGCAGGAGACAGAAGGAAAGGACTCAAGCTATATGGACCTACAAGACAGTAAGAGTAGTATCCCTGCAAGGCCTACTGGATTTGCAGAGTCTTTTACTTCTTCTGATGGCCGGTGA 2874 0.4301 MTTLVMEDPCPKFLSLFFLSLACVVLSDTDPNDVKILNQFRKGLKNPELLPWPEEGGDPCGNPPWKYIFCNGNRVSQIQTKNLNLVGPLPQNFNQLTMLENLGLQNNKLNGPLPSFNGLSKLKYAFLNYNEFESIPEDFFDGLESLEVLALDYNSNLNATTGGWQFPSSLQGSAQLTNLSCMSCNLVGPIPDFLGKMVSLSVLQLSGNNLTGEIPATFNGFPALQILWLNNQKGGGLTGTIDMVATMVSLTSLWLHGNQFKGTIPVKIGDLTFLKDLDLNGNQLVGLIPDALGKMKLDRLDLNNNHFMGPIPNFATPKVTFESNNFCQSKPGVLCSFEVMMLLEFLGGLNYPSNLVNSWTGNNPCDGPWLGIKCNANGKVSMIILSNFNLSGTLSPSVANLDSLVEIRLGGNSLSGEIPSNWTSLRSLTLLDLSGNNISPPLPNFSKSLKLVIDGNPQLIHGSPEGPSSGTGSSSRKPEPSSPDNPSADSNSHPSNSLESNNSKRKYLVSVVAPIAGVAAAALMLIPLYVYCFRKRKGASNGQSSLVIHPRDPSGSDNVVKIVVANDSNGSISTVTGSGSENLNGNGESHVIEAGNLVISVQVLRNVTKNFAPENELGRGGFGAVYKGELDDGTKIAVKRMEAGVISSKALDEFQSEIAVLSKVRHRHLVSLLGYSVEGSERLLVYEYMPQGALSMHLFHWKSLQLEPLSWKRRLNIALDVARGMEYLHTLAHQSFIHRDLKSSNILLGDDFRAKVSDFGLVKLAPDGKSSVVTRLAGTFGYLAPEYAVTGKVTTKADVFSFGVVLMELLTGLMALDEHRPEESQYLAAWFWHIKSDKEKLMTAIDPSLDIKEETFDIISIIAELAGHCTAREPNQRPDMGHAVNVLAPLVEKWKPLYDDTEEYSGIDYSLPLNQMVKDWQETEGKDSSYMDLQDSKSSIPARPTGFAESFTSSDGR. 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05078 957 SUPERFAMILY Protein kinase-like (PK-like) 589 887 IPR011009 -
Seca8g05078 957 CDD STKc_IRAK 617 890 - -
Seca8g05078 957 MobiDBLite consensus disorder prediction 462 501 - -
Seca8g05078 957 ProSitePatterns Serine/Threonine protein kinases active-site signature. 736 748 IPR008271 GO:0004672|GO:0006468
Seca8g05078 957 SMART LRR_typ_2 425 447 IPR003591 -
Seca8g05078 957 SMART LRR_typ_2 247 270 IPR003591 -
Seca8g05078 957 SMART LRR_typ_2 197 220 IPR003591 -
Seca8g05078 957 SMART LRR_typ_2 271 294 IPR003591 -
Seca8g05078 957 SMART LRR_typ_2 119 142 IPR003591 -
Seca8g05078 957 MobiDBLite consensus disorder prediction 924 957 - -
Seca8g05078 957 Pfam Protein tyrosine and serine/threonine kinase 614 885 IPR001245 GO:0004672|GO:0006468
Seca8g05078 957 ProSiteProfiles Protein kinase domain profile. 611 891 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05078 957 ProSitePatterns Protein kinases ATP-binding region signature. 617 639 IPR017441 GO:0005524
Seca8g05078 957 Gene3D Phosphorylase Kinase; domain 1 576 688 - -
Seca8g05078 957 FunFam Receptor-like kinase TMK4 31 332 - -
Seca8g05078 957 Gene3D Transferase(Phosphotransferase) domain 1 689 905 - -
Seca8g05078 957 Gene3D Ribonuclease Inhibitor 338 463 IPR032675 -
Seca8g05078 957 MobiDBLite consensus disorder prediction 456 501 - -
Seca8g05078 957 FunFam Leucine-rich repeat receptor-like kinase 337 462 - -
Seca8g05078 957 Pfam Leucine rich repeat N-terminal domain 341 375 IPR013210 -
Seca8g05078 957 Pfam Leucine rich repeat N-terminal domain 31 71 IPR013210 -
Seca8g05078 957 SUPERFAMILY L domain-like 338 449 - -
Seca8g05078 957 MobiDBLite consensus disorder prediction 932 957 - -
Seca8g05078 957 PANTHER OSJNBA0070M12.3 PROTEIN 16 957 - -
Seca8g05078 957 FunFam receptor protein kinase TMK1 689 906 - -
Seca8g05078 957 SMART serkin_6 611 891 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05078 957 Gene3D Ribonuclease Inhibitor 30 333 IPR032675 -
Seca8g05078 957 SUPERFAMILY L domain-like 29 316 - -
Seca8g05078 957 FunFam receptor protein kinase TMK1 573 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05078 Seca-Chr8 140528599 140532436 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05078 87 924 Receptor kinase-like Gene Family AT1G55610 31.412 3.12e-85 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Seca8g05078 PK_Tyr_Ser-Thr 3.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05078 - - gmx:100781857 1481.08