Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca8g05078 | ATGACGACCCTTGTCATGGAAGACCCTTGTCCGAAGTTCCTTTCCTTATTCTTCCTCTCACTTGCTTGTGTGGTTCTCTCTGACACTGACCCAAATGATGTAAAGATTCTGAACCAATTCAGAAAAGGGTTGAAGAACCCAGAACTGTTGCCATGGCCAGAAGAAGGAGGAGACCCATGTGGGAATCCTCCATGGAAATACATCTTCTGCAATGGCAACAGAGTCTCTCAGATTCAAACCAAAAACTTGAACCTTGTGGGTCCTCTGCCTCAGAACTTCAACCAACTCACCATGCTTGAGAATCTAGGCCTTCAGAACAACAAACTCAACGGTCCCTTACCATCTTTCAATGGCTTGTCGAAGCTAAAGTACGCGTTTTTGAACTACAACGAGTTTGAATCCATCCCTGAAGATTTCTTTGATGGGCTTGAGAGTCTTGAGGTTTTGGCATTGGATTACAACAGCAACCTCAATGCCACCACTGGTGGGTGGCAATTCCCTTCAAGTTTGCAGGGTTCAGCACAGTTGACCAATTTGTCTTGTATGAGTTGCAACTTGGTTGGTCCAATCCCTGATTTTCTGGGAAAAATGGTGTCTTTGTCGGTGTTGCAACTTTCCGGCAACAACTTAACCGGTGAGATTCCGGCAACGTTTAACGGTTTCCCTGCTTTGCAGATTCTATGGTTGAATAACCAGAAGGGTGGTGGCCTCACTGGTACTATTGACATGGTGGCAACAATGGTTTCGCTGACGAGTTTGTGGCTTCATGGGAACCAGTTCAAAGGGACCATTCCCGTGAAGATTGGGGATTTGACTTTTCTGAAGGATCTTGATCTCAATGGTAACCAGCTTGTTGGACTTATTCCTGATGCTTTAGGTAAAATGAAATTGGACCGTTTAGATTTGAACAATAACCACTTCATGGGTCCAATCCCAAATTTTGCAACACCTAAAGTCACTTTTGAATCGAATAATTTTTGTCAATCTAAACCTGGGGTTCTGTGTTCCTTTGAAGTCATGATGCTGCTGGAATTTCTTGGTGGGTTGAATTATCCTTCAAATCTGGTTAATTCATGGACTGGTAATAACCCATGTGATGGGCCATGGTTGGGGATAAAGTGCAATGCTAATGGAAAGGTGTCAATGATTATTTTGTCTAACTTTAATCTTAGTGGTACACTGAGTCCTTCTGTTGCAAACTTAGATTCACTTGTTGAAATCAGGTTGGGTGGTAACAGTCTCAGTGGTGAAATACCCAGCAACTGGACTAGCTTGAGATCCTTGACACTGTTGGATCTAAGTGGCAATAACATTTCCCCTCCCTTGCCAAATTTTAGTAAAAGCTTGAAACTTGTGATTGATGGGAATCCTCAGTTAATTCATGGCAGCCCAGAAGGTCCTTCATCAGGGACCGGGTCATCTTCTAGAAAGCCTGAACCTTCTTCACCTGATAATCCATCAGCAGACTCAAATTCCCATCCCAGTAATTCTCTTGAATCAAATAATTCCAAAAGGAAATACTTGGTTTCAGTTGTAGCTCCTATAGCAGGTGTTGCAGCTGCGGCATTAATGCTCATTCCTCTTTATGTATATTGTTTCAGGAAGAGAAAGGGTGCCTCCAATGGTCAAAGTTCACTGGTAATTCACCCTAGAGATCCATCTGGTTCAGACAATGTGGTAAAGATTGTTGTTGCTAATGATAGCAATGGAAGCATTTCCACAGTCACAGGCAGTGGGTCTGAGAATCTAAATGGAAATGGGGAGTCTCATGTCATTGAAGCTGGAAATCTTGTGATCTCAGTTCAAGTTCTTAGAAATGTGACCAAGAATTTTGCCCCAGAAAATGAGCTTGGACGTGGTGGATTTGGGGCTGTTTACAAGGGAGAATTGGATGATGGGACTAAAATTGCAGTAAAACGAATGGAAGCTGGTGTGATTAGCAGCAAAGCCTTAGATGAATTCCAGTCAGAAATTGCTGTTCTATCAAAAGTCAGACACCGCCATTTAGTGTCTCTTTTGGGTTATTCAGTTGAAGGTAGTGAGAGGCTTCTAGTTTATGAATATATGCCACAAGGGGCTCTCAGTATGCATCTTTTCCATTGGAAGAGCTTACAACTGGAGCCCCTCTCTTGGAAGAGGAGGCTCAATATTGCCTTGGATGTCGCTAGAGGAATGGAGTATCTTCACACTCTGGCTCACCAGAGCTTCATTCACAGAGATCTTAAGTCATCAAATATTTTGCTGGGGGACGACTTTAGAGCAAAAGTTTCAGATTTTGGATTGGTAAAACTAGCTCCTGATGGCAAAAGTTCTGTAGTGACCCGGCTTGCTGGTACATTTGGATACTTGGCACCAGAATATGCAGTGACAGGAAAAGTTACTACTAAAGCAGATGTTTTCAGCTTTGGTGTTGTGCTAATGGAGCTATTAACTGGATTAATGGCACTTGATGAGCATAGGCCTGAGGAAAGCCAATACTTGGCAGCATGGTTCTGGCATATAAAATCAGATAAGGAGAAATTAATGACTGCTATTGATCCATCCCTTGACATAAAGGAAGAAACATTTGATATCATCTCCATCATTGCTGAATTAGCTGGGCACTGCACTGCCAGAGAACCAAACCAACGGCCAGATATGGGTCATGCTGTGAATGTTCTGGCACCACTTGTTGAAAAATGGAAACCATTATATGATGACACTGAGGAGTATTCTGGCATAGATTATAGTCTTCCCCTTAACCAGATGGTGAAGGACTGGCAGGAGACAGAAGGAAAGGACTCAAGCTATATGGACCTACAAGACAGTAAGAGTAGTATCCCTGCAAGGCCTACTGGATTTGCAGAGTCTTTTACTTCTTCTGATGGCCGGTGA | 2874 | 0.4301 | MTTLVMEDPCPKFLSLFFLSLACVVLSDTDPNDVKILNQFRKGLKNPELLPWPEEGGDPCGNPPWKYIFCNGNRVSQIQTKNLNLVGPLPQNFNQLTMLENLGLQNNKLNGPLPSFNGLSKLKYAFLNYNEFESIPEDFFDGLESLEVLALDYNSNLNATTGGWQFPSSLQGSAQLTNLSCMSCNLVGPIPDFLGKMVSLSVLQLSGNNLTGEIPATFNGFPALQILWLNNQKGGGLTGTIDMVATMVSLTSLWLHGNQFKGTIPVKIGDLTFLKDLDLNGNQLVGLIPDALGKMKLDRLDLNNNHFMGPIPNFATPKVTFESNNFCQSKPGVLCSFEVMMLLEFLGGLNYPSNLVNSWTGNNPCDGPWLGIKCNANGKVSMIILSNFNLSGTLSPSVANLDSLVEIRLGGNSLSGEIPSNWTSLRSLTLLDLSGNNISPPLPNFSKSLKLVIDGNPQLIHGSPEGPSSGTGSSSRKPEPSSPDNPSADSNSHPSNSLESNNSKRKYLVSVVAPIAGVAAAALMLIPLYVYCFRKRKGASNGQSSLVIHPRDPSGSDNVVKIVVANDSNGSISTVTGSGSENLNGNGESHVIEAGNLVISVQVLRNVTKNFAPENELGRGGFGAVYKGELDDGTKIAVKRMEAGVISSKALDEFQSEIAVLSKVRHRHLVSLLGYSVEGSERLLVYEYMPQGALSMHLFHWKSLQLEPLSWKRRLNIALDVARGMEYLHTLAHQSFIHRDLKSSNILLGDDFRAKVSDFGLVKLAPDGKSSVVTRLAGTFGYLAPEYAVTGKVTTKADVFSFGVVLMELLTGLMALDEHRPEESQYLAAWFWHIKSDKEKLMTAIDPSLDIKEETFDIISIIAELAGHCTAREPNQRPDMGHAVNVLAPLVEKWKPLYDDTEEYSGIDYSLPLNQMVKDWQETEGKDSSYMDLQDSKSSIPARPTGFAESFTSSDGR. | 958 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca8g05078 | 957 | SUPERFAMILY | Protein kinase-like (PK-like) | 589 | 887 | IPR011009 | - | |
Seca8g05078 | 957 | CDD | STKc_IRAK | 617 | 890 | - | - | |
Seca8g05078 | 957 | MobiDBLite | consensus disorder prediction | 462 | 501 | - | - | |
Seca8g05078 | 957 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 736 | 748 | IPR008271 | GO:0004672|GO:0006468 | |
Seca8g05078 | 957 | SMART | LRR_typ_2 | 425 | 447 | IPR003591 | - | |
Seca8g05078 | 957 | SMART | LRR_typ_2 | 247 | 270 | IPR003591 | - | |
Seca8g05078 | 957 | SMART | LRR_typ_2 | 197 | 220 | IPR003591 | - | |
Seca8g05078 | 957 | SMART | LRR_typ_2 | 271 | 294 | IPR003591 | - | |
Seca8g05078 | 957 | SMART | LRR_typ_2 | 119 | 142 | IPR003591 | - | |
Seca8g05078 | 957 | MobiDBLite | consensus disorder prediction | 924 | 957 | - | - | |
Seca8g05078 | 957 | Pfam | Protein tyrosine and serine/threonine kinase | 614 | 885 | IPR001245 | GO:0004672|GO:0006468 | |
Seca8g05078 | 957 | ProSiteProfiles | Protein kinase domain profile. | 611 | 891 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca8g05078 | 957 | ProSitePatterns | Protein kinases ATP-binding region signature. | 617 | 639 | IPR017441 | GO:0005524 | |
Seca8g05078 | 957 | Gene3D | Phosphorylase Kinase; domain 1 | 576 | 688 | - | - | |
Seca8g05078 | 957 | FunFam | Receptor-like kinase TMK4 | 31 | 332 | - | - | |
Seca8g05078 | 957 | Gene3D | Transferase(Phosphotransferase) domain 1 | 689 | 905 | - | - | |
Seca8g05078 | 957 | Gene3D | Ribonuclease Inhibitor | 338 | 463 | IPR032675 | - | |
Seca8g05078 | 957 | MobiDBLite | consensus disorder prediction | 456 | 501 | - | - | |
Seca8g05078 | 957 | FunFam | Leucine-rich repeat receptor-like kinase | 337 | 462 | - | - | |
Seca8g05078 | 957 | Pfam | Leucine rich repeat N-terminal domain | 341 | 375 | IPR013210 | - | |
Seca8g05078 | 957 | Pfam | Leucine rich repeat N-terminal domain | 31 | 71 | IPR013210 | - | |
Seca8g05078 | 957 | SUPERFAMILY | L domain-like | 338 | 449 | - | - | |
Seca8g05078 | 957 | MobiDBLite | consensus disorder prediction | 932 | 957 | - | - | |
Seca8g05078 | 957 | PANTHER | OSJNBA0070M12.3 PROTEIN | 16 | 957 | - | - | |
Seca8g05078 | 957 | FunFam | receptor protein kinase TMK1 | 689 | 906 | - | - | |
Seca8g05078 | 957 | SMART | serkin_6 | 611 | 891 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca8g05078 | 957 | Gene3D | Ribonuclease Inhibitor | 30 | 333 | IPR032675 | - | |
Seca8g05078 | 957 | SUPERFAMILY | L domain-like | 29 | 316 | - | - | |
Seca8g05078 | 957 | FunFam | receptor protein kinase TMK1 | 573 | 688 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca8g05078 | Seca-Chr8 | 140528599 | 140532436 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca8g05078 | 87 | 924 | Receptor kinase-like Gene Family | AT1G55610 | 31.412 | 3.12e-85 | 296 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-IX | Seca8g05078 | PK_Tyr_Ser-Thr | 3.1e-46 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca8g05078 | - | - | gmx:100781857 | 1481.08 |