Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05069 ATGGATGAAATTGAGGTGCCACAGTATTTCATTTGCCCAATATCCCTCCAAATCATGAAAGATCCTGTTACTGCTATAACTGGCATTACATATGACAGAGACAGCATTGAGCACTGGCTATTCTCCAACAAGAACACAACATGTCCTGTTTCCAAACAGCCCCTTCCAAGAGACTCTGATTTAACCCCTAATCACACCCTTCGCCGCTTAATCCAAGCTTGGTGCACCCAAAATTCTGCACTTGGCATTGATAGAATTCCCACCCCAAAGCCACCACTTAACAACATTCAAGTCCTCAAGCTTCTCAAAGACCTCAAGGACCCCAAGATGAAGCTCAAAAGTCTCATGCAATTGGAGTTGCTTGCAGCAGAGAACCAGAGGAATAAAAAGTGTTTGCTTGAGGCTGGTGTGCCAAAAGCCATGATCTTGTTCATAGTGTCTTGCTATAGAAAAGGCCAAATTGAAGAGGGTCTTGAAGAAGCTCTGAGTTTTCTTCAGTTTGTTAAGGTTCCTGCAGAGGAAGTGAGGCTTCTATTAGCTGAGAATGATCAAATAGTGTTGGATGCTCTGACATGGGTTTTAGCCTGTGAGATAAAGAAGAATTCTATGGCTGTGAAATCACATGCTGTTTTTGTGCTGAAAACAATCATCCATAGGGGTGATCCTAGTGTTCTTGAGAGGTTAAAACCTGAATTCTTTGAAAGGATTGTGAAGGTTCTAAGATGTGGGATTACACAACAAGGGATGAGTGCAGCTCTGAGGGTGTTGTTAAGTGCTTGTTCTTGGGGAAGAAACAGGATCATGATGGTGGAAGCTGGTGCTGTTTTTGAACTCATTGAGATTGAATTAGGGGCACCTGAGAAGAGAATCACAGAGCATACATTGAGTATACTGTTTCATTTGTGCTCAAGTGCAAATGGTAGAGCTCAGTTTCTGTGCCATGAGGGTTCCATTGCAGTGTTGACAGAGAGAATATTGAAGGTTTCTGCGGCAGTGGATGAAAAAGCCATATATGTTCTGTCATTGATATCAAAGTTCTCTGCCACAAAGATGGTGCTGCAAGAGATGTTAAGGGTAGGAACTGTGTCAAAGCTTTTCATGTTGCTTCAAGCTGATCATGCCAAATATATAAAAGACAAAGCAATGGAAATACTCAAGTCTCACTCTGAGGTTTGGAAGAATTCTCCTTGCTTTCTGCAAGCTTGA 1206 0.4221 MDEIEVPQYFICPISLQIMKDPVTAITGITYDRDSIEHWLFSNKNTTCPVSKQPLPRDSDLTPNHTLRRLIQAWCTQNSALGIDRIPTPKPPLNNIQVLKLLKDLKDPKMKLKSLMQLELLAAENQRNKKCLLEAGVPKAMILFIVSCYRKGQIEEGLEEALSFLQFVKVPAEEVRLLLAENDQIVLDALTWVLACEIKKNSMAVKSHAVFVLKTIIHRGDPSVLERLKPEFFERIVKVLRCGITQQGMSAALRVLLSACSWGRNRIMMVEAGAVFELIEIELGAPEKRITEHTLSILFHLCSSANGRAQFLCHEGSIAVLTERILKVSAAVDEKAIYVLSLISKFSATKMVLQEMLRVGTVSKLFMLLQADHAKYIKDKAMEILKSHSEVWKNSPCFLQA. 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05069 401 SUPERFAMILY RING/U-box 3 84 - -
Seca8g05069 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Seca8g05069 401 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Seca8g05069 401 SUPERFAMILY ARM repeat 98 385 IPR016024 -
Seca8g05069 401 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Seca8g05069 401 PANTHER WDSAM1 PROTEIN 3 398 IPR045185 GO:0061630
Seca8g05069 401 Pfam U-box domain 6 79 IPR003613 GO:0004842|GO:0016567
Seca8g05069 401 Gene3D - 96 395 IPR011989 -
Seca8g05069 401 CDD RING-Ubox_PUB 7 58 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05069 Seca-Chr8 140388627 140389832 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05069 2 398 U-box Gene Family AT3G11840 42.404 4.08e-113 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05069 - - lja:Lj0g3v0014579.1 586.26