Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05066 ATGGCGACGTACTTTCATAGTAATTCAGAAATCCAAGGAGGTTCTGCTGACGGACTTCAAACTCTCATACTCATGAATCCTGGTTACATCCAGTACTCAGACACGCCGCCGCCACCGCCGCAGTCACATGCCGGAAACCTCGTATTCCTCAACTCAGCCGCCGGAAACAGCTCCCTTGCCCAACAAAGTCTCCCTCACGCGCCGCCACAATTCGTCGGCGTTCCCCTTTCCGCCGCCTCCGTGGAGCCGTCAGTGCATGCCCATCACGACGTCTCTGCCTTGCAGGGCTTCCAGCCCCGCATGCAGTACAACTTATGGAACACGTTAGACCCCAACGCGGCGGCGCGTGAGGCTTCACGCGCAACTCAGGGGCTGTCGTTGAGCCTTCACGCTCAGGCTCCGGCTGTGTCTGGTGACGACGCGCGCGCGTCGGGTGGTGGGTCGTCGTCTTCTGCTTCCGGGGTTACCAATGGCGTTTCTGGGATTCAGAGTGTGCTGTTGAGTTCAAAGTATTTGAAGGCCACACAGGAACTCTTAGACGAGGTTGTGAATGTTAACAGTGGAATTAAGGTTGAAACGGCAAAGAGGAGCTTTGACAAGACTAAGGTTGTTGGAGAATCATCAGGTGCGGCTAGTGGTGATGGTTCACTTGGTGGGGAGGGAAGTGGGAAGCGTAGCTCTGAACTATCAACCACAGAGAGACAAGAAATTCAGATGAAGAAGGCAAAACTAATCAGCATGCTTGATGAGGTGGAGCAAAGGTATAGGCAGTACCACAACCAAATGCAGATTGTGATATCCTCATTTGAACAAGCTGCGGGGATTGGGTCAGCGAGAACCTACACTGCTCTTGCATTGCAAACAATCTCTAAGCAGTTTCGGTGCTTGAAAGATGCAATTACAAGCCAAATTAGAGCTGCAAATAAGAGCTTAGGAGAAGAGGATTGCTTTGGAGGTAAAATTGAAGGGTCGAGGCTCAAATATGTAGACCATCACCTGAGGCAACAAAGAGCTATTCAACAGTTGGGAATGATGCAACACAATGCTTGGAGACCTCAGAGAGGATTGCCTGAAAGATCTGTTTCTGTCCTGCGTGCTTGGCTCTTTGAACACTTCCTCCACCCTTATCCCAAGGATTCAGACAAACACATGCTTGCAAAACAAACAGGACTTACTAGGAGCCAGGTTTCAAATTGGTTCATAAATGCGCGAGTTAGGCTTTGGAAGCCAATGGTGGAAGAAATGTACATGGAGGAGATGAAGGAGCATGAACTGAATGGGTCAGAGGACAAATCAAGCAAGAACAATGAGGACCCTTTGATGAAAACAACAGCTTCACAAGAGGGAGGTCCAATATCTGAAACAGAATCTAAAAGTTTCAATTCCAAACAAGATGTTGCTAAAAACCAGAACACACCAATAGTTTCAATTTCTACACCATCAACATCACCTGTTGGGGGAAATGTGAGGAACCAATCAGGATTCAGCTTCATTGGATCATCAGAACTAGATGGAATCACACAAGGAAGTCCTAAAAAAACAAGGAACCATGAAATTATGCACTCTCCAAATCGTGTCCCTTCAATCAACATGGATGTCAAGCCCAACGAGGCACACAATGAACAACTTACAATGAAATTTGGGGATGAAAGGCATAACAGAGATGGGTACTCTTTCATGGGAAACCAAACAAACTTCATTGGCGGATTTGGACAGTACCCAATGGAGGAAATTGGGAGGTTTGATGCAGAGCAATTCACACCAAGGTTTTCAGGTAATGGAGTTTCCCTCACTCTTGGTCTTCCTCATTGTGACACAATATCAGGAACACATCAAACGTTTCTTCCAAACCAGAACATTCAACTAGGAAGGAGATTGGATATGAGTGAACCAAATGAGTTTGGTGCCATAAACACTTCCACTTCTCACTCTACAGCTGCATTTGAGAGTATCAACATGCAGAACCCAAAGAGGTTTGCTGCACAATTGTTGCCAGACTTTGTTGCCTAA 2010 0.4706 MATYFHSNSEIQGGSADGLQTLILMNPGYIQYSDTPPPPPQSHAGNLVFLNSAAGNSSLAQQSLPHAPPQFVGVPLSAASVEPSVHAHHDVSALQGFQPRMQYNLWNTLDPNAAAREASRATQGLSLSLHAQAPAVSGDDARASGGGSSSSASGVTNGVSGIQSVLLSSKYLKATQELLDEVVNVNSGIKVETAKRSFDKTKVVGESSGAASGDGSLGGEGSGKRSSELSTTERQEIQMKKAKLISMLDEVEQRYRQYHNQMQIVISSFEQAAGIGSARTYTALALQTISKQFRCLKDAITSQIRAANKSLGEEDCFGGKIEGSRLKYVDHHLRQQRAIQQLGMMQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEMKEHELNGSEDKSSKNNEDPLMKTTASQEGGPISETESKSFNSKQDVAKNQNTPIVSISTPSTSPVGGNVRNQSGFSFIGSSELDGITQGSPKKTRNHEIMHSPNRVPSINMDVKPNEAHNEQLTMKFGDERHNRDGYSFMGNQTNFIGGFGQYPMEEIGRFDAEQFTPRFSGNGVSLTLGLPHCDTISGTHQTFLPNQNIQLGRRLDMSEPNEFGAINTSTSHSTAAFESINMQNPKRFAAQLLPDFVA. 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05066 669 FunFam BEL1-like homeodomain protein 9 353 415 - -
Seca8g05066 669 MobiDBLite consensus disorder prediction 421 532 - -
Seca8g05066 669 SMART prehox3 160 302 IPR006563 -
Seca8g05066 669 MobiDBLite consensus disorder prediction 438 513 - -
Seca8g05066 669 SUPERFAMILY Homeodomain-like 351 417 IPR009057 -
Seca8g05066 669 ProSiteProfiles 'Homeobox' domain profile. 347 410 IPR001356 GO:0003677
Seca8g05066 669 Coils Coil 234 261 - -
Seca8g05066 669 SMART HOX_1 350 414 IPR001356 GO:0003677
Seca8g05066 669 Gene3D - 353 431 - -
Seca8g05066 669 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 78 435 - -
Seca8g05066 669 MobiDBLite consensus disorder prediction 136 155 - -
Seca8g05066 669 CDD homeodomain 350 410 IPR001356 GO:0003677
Seca8g05066 669 MobiDBLite consensus disorder prediction 421 437 - -
Seca8g05066 669 Pfam Associated with HOX 165 301 IPR006563 -
Seca8g05066 669 MobiDBLite consensus disorder prediction 205 235 - -
Seca8g05066 669 Pfam Homeobox KN domain 367 406 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05066 Seca-Chr8 140342647 140347707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05066 1 669 Homeobox Transcription Factor Family AT2G35940 49.800 0.0 539
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Seca8g05066 POX 1.8e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05066 - - gmx:100810851 1036.17