Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05062 ATGGATAATGAGATTGATGTTCCTCCATTCTTTCTCTGCCCCATTTCCTTAGAAATCATGAAGGATCCAGTCACTGTCTCCACAGGCATCACCTATGACAGAGAGAGCATTGAAAAATGGCTCTTTTCAGGAAAAAACAACACATGTCCTGTTACCAAACAACCCCTTCTCTCTGATTCCACTGATCTCATAACCCCTAATCACACCCTTCGCAGACTCATTCAAGCTTGGTGCACCATCAACGCTTCTCATGGCATCGAAAGGATTCCAACTCCTAAGCCTCCAGTAACAAAATCAATGATTGAAAAGCTTCTCAAAGATGCTTCTACTTCCTCTCAATTGCAGATGCAATGCCTCAGAAGCCTTAAAACCATTGCTTCTGAGAGTGAAACTAACAGAAGGTGCATTGAATCTGCTGGTGCTGTTGAGTTCTTAGCATCAGTTGTAACAACCAACACCAATTCTTCTTCTTCATCATCTTTAACAGAATTAGAGGGTTGCTCTGAGGATGAAGAAGGGTTTGATTTGAAATCAGGTGCTGGAGATGAAGCCTTAAGCATCCTCCGTGGTCTTCATTTATCAGAAGCTGGGTTGAAGACTCTCCTAGGCTTTAAAAATGGAGACTTTATTGACTCTTTAACAAAAATCATGCAGAGGGGAATCTATGATTCAAGAACTTATGCAGTTTTGTTGTTGAAATCTATGTCTGAAGTGGCAGATTCTGTGCAGATAGCAAATGTAAAAGCTGAGTTATTTGTGGAGTTAGTTCAAGTTCTTAAAGACCAGATTTCACAGAAGGCTTCACAAGCAACACTTCAGGCACTGATTCAACTTGTTCCTTGGGGGAGAAACAGGATCAAAGCAGTGGAAGCAGGGGCAGTTCCTGTTTTGATAGAACTTCTTCTTGATTGTAAGGACAGAAAGCCTTGTGAAATGGTGATAGTTGTTTTGGAGATGTTGTGTCAGTGTGCTGATGGGCGTGCAGAGCTTTTGAGCCATGGAGCAGGGTTAGCCATAGTGTCAAAGAAGATTCTGAGGGTTTCTACCATGGCAAATGATAGAGCTGTGAGGATTCTGTTATCTGTTTCAAGGTTCTCTGCAACACCAAGTGTTGTTCAAGAGATGCTGCAATTGGGTGTGGTGGCTAAGCTGTGTTTGGTGCTTCAAGTGGATAGTGGAAATAAGGCCAAGGAGAAAGCAAGAGAGATACTTAAATTGCATGCTCGAGCATGGAGGAATTCATCTTGCATACCTAGCAATTTGCTTGCTTCATACCCAACAAGTGTGTGA 1290 0.4225 MDNEIDVPPFFLCPISLEIMKDPVTVSTGITYDRESIEKWLFSGKNNTCPVTKQPLLSDSTDLITPNHTLRRLIQAWCTINASHGIERIPTPKPPVTKSMIEKLLKDASTSSQLQMQCLRSLKTIASESETNRRCIESAGAVEFLASVVTTNTNSSSSSSLTELEGCSEDEEGFDLKSGAGDEALSILRGLHLSEAGLKTLLGFKNGDFIDSLTKIMQRGIYDSRTYAVLLLKSMSEVADSVQIANVKAELFVELVQVLKDQISQKASQATLQALIQLVPWGRNRIKAVEAGAVPVLIELLLDCKDRKPCEMVIVVLEMLCQCADGRAELLSHGAGLAIVSKKILRVSTMANDRAVRILLSVSRFSATPSVVQEMLQLGVVAKLCLVLQVDSGNKAKEKAREILKLHARAWRNSSCIPSNLLASYPTSV. 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05062 429 Pfam U-box domain 7 79 IPR003613 GO:0004842|GO:0016567
Seca8g05062 429 FunFam RING-type E3 ubiquitin transferase 1 87 - -
Seca8g05062 429 Gene3D - 91 415 IPR011989 -
Seca8g05062 429 CDD RING-Ubox_PUB 8 59 IPR045210 -
Seca8g05062 429 SMART Ubox_2 10 77 IPR003613 GO:0004842|GO:0016567
Seca8g05062 429 SUPERFAMILY RING/U-box 4 84 - -
Seca8g05062 429 ProSiteProfiles U-box domain profile. 6 84 IPR003613 GO:0004842|GO:0016567
Seca8g05062 429 SUPERFAMILY ARM repeat 100 412 IPR016024 -
Seca8g05062 429 PANTHER WDSAM1 PROTEIN 4 418 IPR045185 GO:0061630
Seca8g05062 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05062 Seca-Chr8 140264207 140265496 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05062 1 426 U-box Gene Family AT3G52450 60.641 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05062 - - gmx:100811258 619.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05062 8 140264207 140265496 Seca8g05062 8 140264207 140265496 ECH
Seca8g05062 8 140264207 140265496 Seca2g04912 2 135661366 135662424 PCT
Seca2g04913 2 135671973 135673199 Seca8g05062 8 140264207 140265496 PCT