Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05057 ATGAATGACTTATTCTCCGGCTCATTCTCTCGCTTCCGTGGCGAACAAGCCTCGCCGGATCGCCACCATGTCATCGAGATGACAGGCGCTACCGGCGGCGGCGGCGGCGGAGTGAACCTGGACAAGTTCTTTGAGGATGTGGAGGGTGTGAAGGAGGAGCTGAAGGAGCTTGAAGGGATTGCGCAGAGGTTGCAGAGCAGCCACGAGCAGACCAAGACGGTTCACCATGCCAAGGGAGTGAGGGAACTCCGTTCCCGCATGGACGACGACGTTTCGGTGGCTCTGAAGAAGGCGAAGGTTGTGAAGCTTAAGTTGGAGGCACTGGAGCGCTCCAACGCTGCAAACCGAAACCTACCCGGGTGCGGACCCGGGTCATCCTCGGATCGTACCCGAACCTCCGTGGTCAACGGGTTGAAGAAGAAGCTTAAGGACTCCATGGATACCTTCAACCACCTCCGCCAGCTCATCTCTTCAGAATACAGGGACACCGTCCAACGCCGTTACTTCACCGTCACTGGCGAGAACCCCGATGAAAAGACCCTTGATCGCTTGATCTCCACTGGTGAGAGTGAGACCTTCCTTCAGAAAGCCATTCAAGAACAAGGCAGGGGTAGAATTCTGGACACCATCAATGAGATTCAAGAGAGGCATGATGCTGTCAAAGAGTTGGAGAAGAATCTCCAGGAATTGCACCAAGTGTTCCTTGACATGACAGTGTTGGTGCAATATCAAGGTGAGCAATTGGATAATATTGAGAGCCATGTGGCAAGAGCTCACTCGTTTGTGCACACTGGAGCTGAGCAGTTACAAACTGCACGGAAGCACCAGAAAAACACCCGGAAATGGACCTGTTATTGTATTATACTTCTTTTGGTGATCATCTTGTTTGTGGTGCTCTTCACTGTGAAACCATGGGAAAAAAGTGGAAGTGGTGGCAGCGGTGGTGGTAGTCAGCCTGCTCCAGCACAAACACCACCATCTCCCCCTCCTCCTCCTGCTGGTGCTTAA 1008 0.5298 MNDLFSGSFSRFRGEQASPDRHHVIEMTGATGGGGGGVNLDKFFEDVEGVKEELKELEGIAQRLQSSHEQTKTVHHAKGVRELRSRMDDDVSVALKKAKVVKLKLEALERSNAANRNLPGCGPGSSSDRTRTSVVNGLKKKLKDSMDTFNHLRQLISSEYRDTVQRRYFTVTGENPDEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKELEKNLQELHQVFLDMTVLVQYQGEQLDNIESHVARAHSFVHTGAEQLQTARKHQKNTRKWTCYCIILLLVIILFVVLFTVKPWEKSGSGGSGGGSQPAPAQTPPSPPPPPAGA. 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05057 335 Coils Coil 40 67 - -
Seca8g05057 335 Gene3D - 38 170 - -
Seca8g05057 335 FunFam Syntaxin 132 203 303 - -
Seca8g05057 335 CDD SynN 40 197 IPR006011 GO:0016020
Seca8g05057 335 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 210 272 IPR000727 -
Seca8g05057 335 MobiDBLite consensus disorder prediction 307 335 - -
Seca8g05057 335 Pfam SNARE domain 246 298 IPR000727 -
Seca8g05057 335 Gene3D - 206 303 - -
Seca8g05057 335 MobiDBLite consensus disorder prediction 321 335 - -
Seca8g05057 335 CDD SNARE_syntaxin1-like 209 271 - -
Seca8g05057 335 SMART tSNARE_6 205 272 IPR000727 -
Seca8g05057 335 ProSitePatterns Syntaxin / epimorphin family signature. 216 255 IPR006012 GO:0005484|GO:0006886|GO:0016020
Seca8g05057 335 Pfam Syntaxin 42 245 IPR006011 GO:0016020
Seca8g05057 335 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 37 167 - -
Seca8g05057 335 SUPERFAMILY t-snare proteins 38 265 IPR010989 GO:0016020|GO:0016192
Seca8g05057 335 PANTHER SYNTAXIN 61 293 IPR045242 -
Seca8g05057 335 SMART SynN_4 35 161 IPR006011 GO:0016020
Seca8g05057 335 Coils Coil 210 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05057 Seca-Chr8 140177138 140178900 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05057 32 329 SNARE and Associated Proteins AT3G11820 73.115 4.30e-152 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05057 K08486 - gmx:100809258 497.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05057 8 140177138 140178900 Seca8g05054 8 140153744 140155424 PCT