Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05056 ATGCAGATGGATATGTTTGATGATAAATCAACTGTTAATCTGCAAAAAGATGAAGTTCGGAATAATGATGTTTCATGTGGGGATAGTTCTAGTTGTGAAGATAGTGATGATACCTCTGGTGGAGAAGATAATGATGGTAGTTGTTGTGGAGAAGATAATGATGATAGTTGTAGTGAAGAGGAATTTCATATTGGGAATGAGAAAGTGAGTGATGAGAAAATGAGTGAGGAAAAAGTGAAAGTAGGTGATGTAGAAAAAAGGATTTTAGACTTAACAGGTGATGATATACAAGCATTAGAGTTTGGTTCTGAAGAGCAAGCTTTTTCATTTTACGAGTCATATGCGAAAGCTTTAGGTTTTGTTGTTAGGAAAGATGATGTGAAGAAGGATGTAATGGGACAGATTGTAATGCGCCAGTTTGTTTGCAATAGAGAAGGATTAAGGAATAAAAAACATTTCATAAGGGTAGATAGGAAAAGAGATCATAAACCTATGACCCGCACAAATTGTTTAGCTAAGTTGCGGATCCACTACCATCAAAGGACATCTAAATGGAGAGTGGTTTCCTTTGAGGAGTGTCATAACCATGAACTTACTCTAGCCAAATTTGTGTATTTGTTGCCTGCATACCATAAAATGACAGAAGCAGACAAAGCTCAAGTGGACAGTTTGCATTCTTTTGGGGTAAGAACATGTCATATAATGGGGTATCTTGTTTCTCAAAAGGGTGGATATGGTGGTGTTGGGTTTACTAGAAAGGATTTATATAACTATTTGGATAGCAAAACTCGTATGAAGATTAAAGACGGGGATGCACGTGCTGTATTGAGTTATCTACAAGGCAAAGCTGACAATGGAGGGACATTATTTGCTAGATATCAAAATACTAGAGATGGTAAGCCGAAGTATCTATTTTGGGCAGATGCAGTTAGCAGATATGATTATAAGTGTTTTGGTGATGTTGTTGCCTTCGACACCACATATAAAAAGAATAGGTACAACTATCCTCTGGTTATCTTTTCTGGTTGCAATCATCATTCGCAAACCATAATTTTTGGTTGTGCTCTTGTCTTAGATGAAACAACTGAGACGTACACGTGGGTATTGGAATCTTTTCTGGCTGCAATGTCAAATAAACATCCAAAAGCAGTGGTCACAGATGGAGATGGTGCCATGAGGGAGTCCATAAGGCATGTTTTTCCTGAGGCTTCACATCTTTTGTGTGCATGGCACTTGCATAACAATGCATGTGAAAATGTGAAGCACCCTGCATTTTTGGAGGACTTCAAGACGGCTATGTATACAAATTTTTCACCTGAACAATTTGAAGAATATTGGGAGAATATGGTTGAGAAGCATGGTGTTGTGGGAAACAGGATTAGGACAACATCCCAATGTGAAGCTATTAGTTCAGTCATTAAGGTGTATGTTAAGAAAGAAAGCAACATGGTTGAGTTTATGCATAATTTTCATAGAGCTTTGAGAGAGTACAAAAATAATGATTTCGTTGCTAATTTTAAAGGGCTTTACTCAGAACCTGTGATGACTACACCACTTGTGAAGATTGAGAAAGAGGCTTCCAAAGTCTATACAGTGGAGATTTTTAGAGAAGTGAAACAACAGATTGAAAAGGCATGCATATTAAATGTTATTGGAAGAGAAGAAGCTGGAGAAAAGCTGAATTTCAAGCTTAGCAAATATTGCAACCCTGGTTCTGAAAAAATTATTATTTACGATACTACAAATTCAACTTTTAATTGTCAGTGCAGGCTGTTTGAATCTCGCGGCATTCCATGTGCTCATATCATTTTTGTGATGAAAAATGAACATATGGAACATATTCCTAGTAACTTGATATTGGCAAGGTGGACAAAGAATGCGAAGAGAGATTTCCTCTATTCTTCTCAGGCAGATGAAGTAGAAGATGAATTAACCAATACAGTTCGTTACTTTGCTTTCATTGCTGCGTGTAATGCTTTGTTTGAAGCGGGGAGGAATAAGAGTGGTTGTTTCACTGAAATGGTTGATGATATTTACAACCTTACTTTGAAGTATAAAAACAAAGGTGATCAACGGTCCTCACAAAGTGGAGCAGATAACAACATTGCGGAGCCTACTAAGGTGAAAACTAAAGGTGCTCCTAAGAAAAAAAGTTTACAAAGAAGAGGCATTGTTCAAATTGTACAAAGATCCCCTTCAGAAGATATTGAAATGAGCATACCGGCTGATCATGAACGTGAGGTTATGGACCATGATGATTCTAAGGAGCAAGCTAATATTTGTAATGATAGAGGAAGTCAAAGTTTGAAGGTTGCTGCACATGATATGCATACTAGTGGATCGGAGCCTGTCAATGTAGTGTTGCAAAACTTAAATCCTGGTGTGCAGGCTGTAAATCCAGGTATGCAAACTGTAAATCCTGGTGTGCAGGTTGTAAATCCAGGTCTCAATCATGTGGTAGTCAAGGATATGTTTCGTCATAAGAGGCTATATACTTCAATAGACCAGTAG 2511 0.3759 MQMDMFDDKSTVNLQKDEVRNNDVSCGDSSSCEDSDDTSGGEDNDGSCCGEDNDDSCSEEEFHIGNEKVSDEKMSEEKVKVGDVEKRILDLTGDDIQALEFGSEEQAFSFYESYAKALGFVVRKDDVKKDVMGQIVMRQFVCNREGLRNKKHFIRVDRKRDHKPMTRTNCLAKLRIHYHQRTSKWRVVSFEECHNHELTLAKFVYLLPAYHKMTEADKAQVDSLHSFGVRTCHIMGYLVSQKGGYGGVGFTRKDLYNYLDSKTRMKIKDGDARAVLSYLQGKADNGGTLFARYQNTRDGKPKYLFWADAVSRYDYKCFGDVVAFDTTYKKNRYNYPLVIFSGCNHHSQTIIFGCALVLDETTETYTWVLESFLAAMSNKHPKAVVTDGDGAMRESIRHVFPEASHLLCAWHLHNNACENVKHPAFLEDFKTAMYTNFSPEQFEEYWENMVEKHGVVGNRIRTTSQCEAISSVIKVYVKKESNMVEFMHNFHRALREYKNNDFVANFKGLYSEPVMTTPLVKIEKEASKVYTVEIFREVKQQIEKACILNVIGREEAGEKLNFKLSKYCNPGSEKIIIYDTTNSTFNCQCRLFESRGIPCAHIIFVMKNEHMEHIPSNLILARWTKNAKRDFLYSSQADEVEDELTNTVRYFAFIAACNALFEAGRNKSGCFTEMVDDIYNLTLKYKNKGDQRSSQSGADNNIAEPTKVKTKGAPKKKSLQRRGIVQIVQRSPSEDIEMSIPADHEREVMDHDDSKEQANICNDRGSQSLKVAAHDMHTSGSEPVNVVLQNLNPGVQAVNPGMQTVNPGVQVVNPGLNHVVVKDMFRHKRLYTSIDQ. 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05056 836 MobiDBLite consensus disorder prediction 689 703 - -
Seca8g05056 836 Pfam FAR1 DNA-binding domain 109 199 IPR004330 -
Seca8g05056 836 ProSiteProfiles Zinc finger SWIM-type profile. 578 610 IPR007527 GO:0008270
Seca8g05056 836 MobiDBLite consensus disorder prediction 59 77 - -
Seca8g05056 836 MobiDBLite consensus disorder prediction 35 58 - -
Seca8g05056 836 MobiDBLite consensus disorder prediction 1 77 - -
Seca8g05056 836 MobiDBLite consensus disorder prediction 17 34 - -
Seca8g05056 836 PANTHER OS01G0519700 PROTEIN 99 767 - -
Seca8g05056 836 SMART 26again6 585 612 IPR006564 GO:0008270
Seca8g05056 836 MobiDBLite consensus disorder prediction 689 722 - -
Seca8g05056 836 Pfam MULE transposase domain 321 415 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05056 Seca-Chr8 140169908 140173512 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca8g05056 MULE 6.4e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05056 - - ccaj:109792835 810.061