Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05054 ATGAACGACTTGTTCTCCGGCTCCTTCTCTCGCTTCCGTAACACGGATCAAGTCTCGCCGGACAACCACCACCACGTCATCGAGATGTCATCGACGGAGGGAGGGGTGAACCTGGACAAGTTCTTCGACGAAGTAGAGAGCGTGAAGGAGGAGCTGAAGGAACTGGAGCGTCTCCACGAGAGCTTGCGTGGGTCCCACGAAAAGAGCAAGACCCTTCACAGTGCCAAAGCCGTGAAGGAGCTCCGGTCACGCATGGATGGGGACGTGGCACTTGCTCTTAAGAAAGCTAAGGTCGTCAAGATCCGGCTCGAGGCACTGGACCGGTCCAATCAGGCTAGCCGGAGCTTGCCAGGGGCCGGACCCGGTTCGTCCTCGGACCGGACCAGGACCTCTGTTGTGGCCGGTCTGAGGAAGAAGCTGAAAGACTCCATGGATAGCTTCAACAATCTCAGACAAGAGATATCCTCTGAGTACAGGGAGACCATACAACGCAGATACTACACTGTCACTGGAGAGAACCCTGATGATAAAACCATTGACCTTCTCATCTCTACTGGTGTGAAAGTGAAAGTTTCTTGCAGAAAGCGATCGAGCAGCAAGGGAGAGCTAGCATCATGGACACAATACAAGAGATTCAAGAGAGGCATGACACGGTGA 657 0.5388 MNDLFSGSFSRFRNTDQVSPDNHHHVIEMSSTEGGVNLDKFFDEVESVKEELKELERLHESLRGSHEKSKTLHSAKAVKELRSRMDGDVALALKKAKVVKIRLEALDRSNQASRSLPGAGPGSSSDRTRTSVVAGLRKKLKDSMDSFNNLRQEISSEYRETIQRRYYTVTGENPDDKTIDLLISTGVKVKVSCRKRSSSKGELASWTQYKRFKRGMTR. 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05054 218 Pfam Syntaxin 40 194 IPR006011 GO:0016020
Seca8g05054 218 Coils Coil 133 153 - -
Seca8g05054 218 SMART SynN_4 33 159 IPR006011 GO:0016020
Seca8g05054 218 Coils Coil 38 65 - -
Seca8g05054 218 MobiDBLite consensus disorder prediction 111 130 - -
Seca8g05054 218 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 35 165 - -
Seca8g05054 218 SUPERFAMILY t-snare proteins 38 195 IPR010989 GO:0016020|GO:0016192
Seca8g05054 218 Gene3D - 36 169 - -
Seca8g05054 218 CDD SynN 38 186 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05054 Seca-Chr8 140153744 140155424 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05054 30 186 SNARE and Associated Proteins AT3G11820 75.796 5.77e-84 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05054 K08486 - gmx:100793347 282.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05054 8 140153744 140155424 Seca8g05054 8 140153744 140155424 ECH
Seca8g05057 8 140177138 140178900 Seca8g05054 8 140153744 140155424 PCT