Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05053 ATGGCGATGCAAACTGTTTATCTTAAAGAACATGAAGGAATTGTCCACAATTCTGTTGGGCAGTTTTCATCTGTGACTTCAGCTCCATGGTGGGGTGGTTCCTTTGGATCTCAAGCAGTTTATGGGGAATCTTGTGGTCAAATGAAACCCTTTTCATTGGAACTTTCTAACTACGTGGACCAACTTGCTTCCAGTAAGCAATCAGTACGAGGAGTTGAACAGTTGTTGGATAAAGGACATACAAACCAGTTCACCATCTTTGCAGACATTTCTTTTTCAGATGATTGTAAAATGTCAGGTGATACACAAAATCCTCAGGCAACCTTATCACTGCAGTCATCATTTGCTGTTGCTGAGCCCCGTAATCGATTTGAGCTAGGGTTTAATCAGCCTATGATCTGTGCAAAATATCCTTATATGGATCAATTTTATGGGCTCTTCTCAACTTATGGACCTCAAATTTCGGGACGTATAATGCTTCCACTTAACTTGACATCGGATGAAGGACCAACTTACGTAAATGCTAAGCAGTACCATGGTATCATCAGACGTCGGCAATCCCGTGCAAAAGCTGTGCTTGAGAAGAGATTGATAAAACGTCGCAAGCCATATATGCATGAATCACGCCATCTACATGCAATGCGGCGACCAAGAGGATGTGGAGGTCGCTTCTTGAACACAAGAAATTCTACTAATGGAAATGGTAAAACTGGAAGTGAAGTGAATAACAAAAAAACTGGTGGGCAACAATTGCAGTATAGTGGGTCTCAGAGTTCTGAAGTCCTGCAATCTGAGGTTGGAACTTTAAATTCATCAAAGGAGACAAATGGAAGCAGTCCAAATATGTCAGGGTCAGAGGTGACTAGCATGTATTCAAGGGGAGGAGGTCTTGATGGCTTTGCTATCAATCATCTTGGATCTGCTGTCCACTCTCTTGCTGACATGATAGATACAGGGCATGGTATCCTCATGCCCACAAAATGGGTTGCAACAGCTGCAGGTGGCTGTTGCAATCTTAAAGTTTGA 1026 0.425 MAMQTVYLKEHEGIVHNSVGQFSSVTSAPWWGGSFGSQAVYGESCGQMKPFSLELSNYVDQLASSKQSVRGVEQLLDKGHTNQFTIFADISFSDDCKMSGDTQNPQATLSLQSSFAVAEPRNRFELGFNQPMICAKYPYMDQFYGLFSTYGPQISGRIMLPLNLTSDEGPTYVNAKQYHGIIRRRQSRAKAVLEKRLIKRRKPYMHESRHLHAMRRPRGCGGRFLNTRNSTNGNGKTGSEVNNKKTGGQQLQYSGSQSSEVLQSEVGTLNSSKETNGSSPNMSGSEVTSMYSRGGGLDGFAINHLGSAVHSLADMIDTGHGILMPTKWVATAAGGCCNLKV. 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05053 341 Gene3D - 168 228 - -
Seca8g05053 341 ProSiteProfiles NF-YA/HAP2 family profile. 167 227 IPR001289 GO:0003700|GO:0006355
Seca8g05053 341 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 60 292 IPR001289 GO:0003700|GO:0006355
Seca8g05053 341 MobiDBLite consensus disorder prediction 215 290 - -
Seca8g05053 341 MobiDBLite consensus disorder prediction 224 290 - -
Seca8g05053 341 SMART cbf3 166 227 IPR001289 GO:0003700|GO:0006355
Seca8g05053 341 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 170 224 IPR001289 GO:0003700|GO:0006355
Seca8g05053 341 PRINTS CCAAT-binding transcription factor subunit B signature 201 224 IPR001289 GO:0003700|GO:0006355
Seca8g05053 341 PRINTS CCAAT-binding transcription factor subunit B signature 170 192 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05053 Seca-Chr8 140147209 140151336 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05053 1 341 CCAAT-HAP2 Transcription Factor Family AT3G05690 42.975 3.43e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Seca8g05053 CBFB_NFYA 9.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05053 K08064 - gmx:100808195 539.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05053 8 140147209 140151336 Seca2g04917 2 135732815 135739700 PCT