Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05045 ATGGGAAACAACTGTGTTGGATCGAGAACCTCTACTTTTCCAAGTTCATTCTGGTGGTCACGTGCAAAGAAGAAAGAGGCTTCTCGTGCACACAAAGAAGTAGCTGTGAGCAAAAACTCAAAAGCTACAGAACATGTTCAACGCAAGCCTCCACAGGTAGTTAAGATTGACAAGGAGGAGTTGAAGACACAATCCAAAGAGACTACTAAATCACCTTCAGAATCTATAGTTGCTACAGGAGAGCCTGCAAAACCAAAGAGACCCCACAATGTGAAGAGGCTAGCAAGTGCAGGGCTCAAAGCAGATTCTGTTTTGCAGAGAAAAACGGGTAGTCTTAGGGAGTATTATAATTTGGGACAGAAACTAGGACAAGGGCAATTTGGAACTACTTTCCTTTGCGTGGAGAAAGCTACTGGGAAACAGTATGCTTGCAAGTCCATCTTGAAGAGGAAATTGCTGACAGATGAGGATGTGGAGGATGTGAGGAGGGAGATTCAGATAATGCACCACTTGGCTGGGAGTCCTAATGTGATATCCATTAAGGAGGCTTATGAGGATGCTGTTGCTGTTCATGTTGTCATGGAATTGTGTGCTGGGGGTGAACTGTTTGATAGGATTGTGGAAAGAGGGCATTACACAGAAAGAAAAGCAGCTAAACTTGCAAGGACTATAGTAGGTGTTATTGAGTCTTGTCACTCCCTTGGAGTAATGCATCGTGATCTTAAGCCTGAGAACTTCCTTTTCGTCAATGAGCAAGAAGATTCCCCCCTCAAGGCAATAGATTTTGGACTGTCTGCTTTTTTCAAACCAGGTGAAATTTTCAATGATGTGGTAGGAAGTCCTTATTATGTTGCACCTGAAGTTCTACGCAAGCATTATGGTCCAGAAGCAGATGTATGGAGTGCTGGTGTTATCATATATATTCTCTTATGTGGTGTGCCTCCATTTTGGGCCCAATCATTTTGCTTAATTTATATTTCCTTCTGCAGTTTCCTGTTTCTAAAAATTTTAACATTTATCTTGTTCCATGTAATAGAATCGGAGCAAGAGATATTTGAGGCGATTTTGCATGGTGATCTCGATTTCACATCAGATCCTTGGCCTAGTATCTCTGAAAGTGCAAAAGACTTGGTTAGGAAGATGCTTGTCAGAGATTCTAGTAAACGGATAACAGCTTTTGATGTTCTTCGTCACCCCTGGATTCAGGTTGATGGAGCAGCCCCAGACAAGCCTCTTGATTCTGCAGTTTTGACTCGCCTGAAGCAGTTTACTGCAATGAACAAGCTCAAGAAAATGGCTCTTAGAGTTATTGCAGAGAACCTGTCTGAAGAAGAAATTGCTGGATTGACAGAAATGTTTAAGATGATAGACACAGACAATAGTGGTCAAATTACTTTTGAAGAACTCAAAATTGGACTGAAAAAATTTGGTGCTAATCTCAATGAATCTGAAATTTATGATCTCATGCAAGCGGCAGATGTTGATAACAGTGGCACAATTGACTATGGAGAATTCATAGCTGCAACATTGCATTTAAACAAAGTTGACAGAGAAGATCATTTAATTGCAGCTTTCTCATATTTTGATAAAGATGGAAGTGGCTATATCACTCAAGATGAGCTTCAAAAAGCTTGTGAAGAATTTGGCATAGGGGATGTCCCCTTGGAGGAAATGATCCGAGAAGCTGATCAGGATAATGATGGACGAATAGACTACAGTGAATTTGTGGCTATGATGCAGGGTAAGAGGGGCCGAAAGGGTAGCACTAGTTTTAGAATTGGATTTAGGGAGGTACTACCAGTATGTTAA 1809 0.4113 MGNNCVGSRTSTFPSSFWWSRAKKKEASRAHKEVAVSKNSKATEHVQRKPPQVVKIDKEELKTQSKETTKSPSESIVATGEPAKPKRPHNVKRLASAGLKADSVLQRKTGSLREYYNLGQKLGQGQFGTTFLCVEKATGKQYACKSILKRKLLTDEDVEDVRREIQIMHHLAGSPNVISIKEAYEDAVAVHVVMELCAGGELFDRIVERGHYTERKAAKLARTIVGVIESCHSLGVMHRDLKPENFLFVNEQEDSPLKAIDFGLSAFFKPGEIFNDVVGSPYYVAPEVLRKHYGPEADVWSAGVIIYILLCGVPPFWAQSFCLIYISFCSFLFLKILTFILFHVIESEQEIFEAILHGDLDFTSDPWPSISESAKDLVRKMLVRDSSKRITAFDVLRHPWIQVDGAAPDKPLDSAVLTRLKQFTAMNKLKKMALRVIAENLSEEEIAGLTEMFKMIDTDNSGQITFEELKIGLKKFGANLNESEIYDLMQAADVDNSGTIDYGEFIAATLHLNKVDREDHLIAAFSYFDKDGSGYITQDELQKACEEFGIGDVPLEEMIREADQDNDGRIDYSEFVAMMQGKRGRKGSTSFRIGFREVLPVC. 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05045 602 ProSiteProfiles EF-hand calcium-binding domain profile. 444 479 IPR002048 GO:0005509
Seca8g05045 602 CDD EFh 449 508 IPR002048 GO:0005509
Seca8g05045 602 ProSitePatterns EF-hand calcium-binding domain. 493 505 IPR018247 -
Seca8g05045 602 SUPERFAMILY EF-hand 440 580 IPR011992 -
Seca8g05045 602 MobiDBLite consensus disorder prediction 28 89 - -
Seca8g05045 602 Pfam EF-hand domain pair 520 580 IPR002048 GO:0005509
Seca8g05045 602 Pfam EF-hand domain pair 449 509 IPR002048 GO:0005509
Seca8g05045 602 ProSitePatterns EF-hand calcium-binding domain. 529 541 IPR018247 -
Seca8g05045 602 ProSiteProfiles EF-hand calcium-binding domain profile. 516 551 IPR002048 GO:0005509
Seca8g05045 602 FunFam Calcium-dependent protein kinase 1 409 583 - -
Seca8g05045 602 MobiDBLite consensus disorder prediction 28 67 - -
Seca8g05045 602 SUPERFAMILY Protein kinase-like (PK-like) 114 402 IPR011009 -
Seca8g05045 602 Gene3D Transferase(Phosphotransferase) domain 1 202 407 - -
Seca8g05045 602 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
Seca8g05045 602 ProSiteProfiles Protein kinase domain profile. 116 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05045 602 CDD EFh 520 580 IPR002048 GO:0005509
Seca8g05045 602 SMART efh_1 448 476 IPR002048 GO:0005509
Seca8g05045 602 SMART efh_1 520 548 IPR002048 GO:0005509
Seca8g05045 602 SMART efh_1 554 582 IPR002048 GO:0005509
Seca8g05045 602 SMART efh_1 484 512 IPR002048 GO:0005509
Seca8g05045 602 CDD STKc_CAMK 116 400 - -
Seca8g05045 602 Pfam Protein kinase domain 116 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05045 602 PANTHER SERINE/THREONINE-PROTEIN KINASE 106 575 - -
Seca8g05045 602 FunFam calcium-dependent protein kinase 1 202 408 - -
Seca8g05045 602 SMART serkin_6 116 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05045 602 ProSitePatterns EF-hand calcium-binding domain. 563 575 IPR018247 -
Seca8g05045 602 ProSitePatterns Protein kinases ATP-binding region signature. 122 149 IPR017441 GO:0005524
Seca8g05045 602 FunFam Calcium-dependent protein kinase 1 118 201 - -
Seca8g05045 602 Gene3D Phosphorylase Kinase; domain 1 118 201 - -
Seca8g05045 602 ProSitePatterns EF-hand calcium-binding domain. 457 469 IPR018247 -
Seca8g05045 602 Gene3D - 408 583 - -
Seca8g05045 602 ProSiteProfiles EF-hand calcium-binding domain profile. 480 515 IPR002048 GO:0005509
Seca8g05045 602 ProSiteProfiles EF-hand calcium-binding domain profile. 555 585 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05045 Seca-Chr8 139852048 139856697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05045 1 580 EF-hand Containing Proteins AT5G04870 66.612 0.0 816
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca8g05045 Pkinase 2.9e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05045 K13412 - gmx:100783079 969.918