Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05042 ATGGAGGTTCCAGAGATGGAAGGCAAGACTGAGAGTCATGGGACATCAGCAGTGGCCTTTGTGGAAGGGGGGATTCAAGAAGCCTGTGATGATGCTTGCAGCATATGCCTTGAGGATTTTTGTGAAAGTGATCCTGCAAACGTCACTAATTGCAAGCATGAGTTCCACCTGCAGTGCATTCTTGAATGGTGTCAGAGAAGCTCCCAATGTCCTATGTGTTGGCAACCTATTAGCTTGAAGGATGCTACCAGTCAAGAATTGCTTGAGGCAGTGGAGATGGAGAGGAGCTTGAGGACTAACCCCTCAAGAAATTCTGCAATTTTTCATCATCCCATCCTTGGTGATTTTGAATTGCAGCATTTACCTGTCGGTGTAAATGATGCTGATGTTGAACAGCGAATAATTCAACATTTAGCTGCTGCTGCAGCAATGAGGAGAGCACACCACCTTGGTCAGAGAGAAGGTCAAAGAACTAGGTCATCTGCTCGAGGCCGTCCACACTTCTTAGTATACTCAACTGAGCCCAGTGCACCTCCATCAGGTCCTGATTCTGCTGCTGGAGGGGGAAATGAACCAGTGGCAATTCCTTTAGGAAGTCCATCTACCCCACTTACATCTGATGGAGATGAACCAACATCATCACAGCAGATCCCATATTTTCAAACTCATGGCTCTTCTTTAACTCCCGGGTCTACTGTCATGGCAACAAATCTTCAAGGAATTTACTCTGATGATAGAAGGTCTACCACACATTCATCACCAGCAAACCAAGATAGAGCAGGGCCATCAGAATTCCAGTCATTATCTGATTCTCTGCGGTCCAGATGGAATGCAGTGTCCCTGAGATACAAAGAATCAATTTCAAAAGGCACAAGGGGATGGAAGGAGAGGCTGTTCTCTCGTAATTCTTCCATGTCAGAATTTGGTTCAGAAGTTAGAAGAGAGTTGAATGCTGGAATTGCTAGTGTGTCCCGATTGATGGAGCGCCTTGAAACCAGGGAAAACAATCAAGCTGAAGGTACTTCTTTGTCAAATCATTTGATGGGTGGTTCTATCCAAGAAACAAGCAACCAGAGGAATGTGGAAGCTCATGGAGAGAACTCTTTACATGAAAACAAGACTCCAGCTACATGTTCTGCTAGCTCAGATTCAAATTGA 1158 0.4516 MEVPEMEGKTESHGTSAVAFVEGGIQEACDDACSICLEDFCESDPANVTNCKHEFHLQCILEWCQRSSQCPMCWQPISLKDATSQELLEAVEMERSLRTNPSRNSAIFHHPILGDFELQHLPVGVNDADVEQRIIQHLAAAAAMRRAHHLGQREGQRTRSSARGRPHFLVYSTEPSAPPSGPDSAAGGGNEPVAIPLGSPSTPLTSDGDEPTSSQQIPYFQTHGSSLTPGSTVMATNLQGIYSDDRRSTTHSSPANQDRAGPSEFQSLSDSLRSRWNAVSLRYKESISKGTRGWKERLFSRNSSMSEFGSEVRRELNAGIASVSRLMERLETRENNQAEGTSLSNHLMGGSIQETSNQRNVEAHGENSLHENKTPATCSASSDSN. 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05042 385 MobiDBLite consensus disorder prediction 146 165 - -
Seca8g05042 385 MobiDBLite consensus disorder prediction 336 363 - -
Seca8g05042 385 ProSiteProfiles Zinc finger RING-type profile. 33 73 IPR001841 -
Seca8g05042 385 SUPERFAMILY RING/U-box 25 80 - -
Seca8g05042 385 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 19 81 - -
Seca8g05042 385 SMART ring_2 33 73 IPR001841 -
Seca8g05042 385 MobiDBLite consensus disorder prediction 370 385 - -
Seca8g05042 385 MobiDBLite consensus disorder prediction 199 232 - -
Seca8g05042 385 FunFam E3 ubiquitin-protein ligase RHF2A 4 107 - -
Seca8g05042 385 MobiDBLite consensus disorder prediction 170 232 - -
Seca8g05042 385 MobiDBLite consensus disorder prediction 147 161 - -
Seca8g05042 385 MobiDBLite consensus disorder prediction 334 385 - -
Seca8g05042 385 Coils Coil 313 333 - -
Seca8g05042 385 MobiDBLite consensus disorder prediction 244 268 - -
Seca8g05042 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 83 IPR013083 -
Seca8g05042 385 Pfam Ring finger domain 32 73 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05042 Seca-Chr8 139826199 139831590 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05042 30 81 C3H Transcription Factor Family AT4G00335 46.154 7.99e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05042 K19043 - gmx:100803582 604.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05042 8 139826199 139831590 Seca8g05042 8 139826199 139831590 ECH
Seca8g05042 8 139826199 139831590 Seca2g04939 2 135971006 135975329 PCT