Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05032 ATGGGCAACAACTGTGTGGGACCAAACCTCGGTGGGAATGGTTTCCTTCAATCCGTTTCGGCGGCGGTGTGGAAAACCCGCGCACCGGAGGCCAGTCTTCCGCCGCCGAACTCCGACGACAAGAACAAATCTCCGGCACCAGCGAATGCGGCCAGCGATTCTTCCAATGGAGGAGGGTCGAGTTCCGCCGGCAAAGGTTCCGATGCTTCAAATAATAATCGCTCTGACGGTTCCAGAGGAGTTGATCCTCCAATGCCGGTTCAGAGCACACCGCCTGAACAGGTGAAAATAACCGCCACGGAAACAAAACCGGGTCAGGTTCAACCGGAGAAGCCGCAGGTAAATAACGAACCGGCATCTAGCGCTGGTGGTGGTGGCGATGCAGGGAAAGCTAAGAAACCTACTCATGTGAAAAGGGTATCTAGTGTTGGACTTCAAGTGGAATCTGTGTTGGGTAGGAAAACAGAGAATTTGAAGGATTTTTACAGTTTGGGGAGGAAGCTTGGGCAAGGGCAATTTGGGACAACTTTCCTTTGTGTGGAGAAGGGGACTAACAAAGATTTTGCTTGTAAATCCATTGCAAAGAGGAAATTGACCACACAGGAGGATGTTGAGGATGTTAGGAGGGAGATTCAGATCATGCACCACTTGGCTGGTCACCCCAATGTGATACAAATAATTGGTGCTTATGAGGATGCAGTTGCTGTCCATGTTGTCATGGAGCTCTGTGCTGGTGGGGAGCTATTTGACAGGATCATACAGAGGGGGCATTACACTGAGAGAAAGGCGGCTGAACTTGCGAGATTGATAGTCAGTGTTGTTGAGGCTTGCCATTCTTTAGGTGTCATGCATAGGGACTTGAAGCCAGAAAATTTTCTCTTCATCAACAATGAAGAAGAATCACCACTTAAGACAATAGATTTTGGACTCTCGGTTTTCTTTAGGCCAGGTGAAACATTTACTGATGTGGTTGGGAGTCCGTACTATGTGGCCCCTGAAGTTTTGCGGAAGCAATATGGTCCAGAATGTGATGTTTGGAGTGCTGGGGTGATCATTTATATTTTACTCAGTGGAGTTCCCCCATTTTGGGACGAAACGGAACAGGGAATATTTGAGCAAGTATTGAGAGGAGAGCTTGACTTTGTTTCTGAACCATGGCCAAGCATATCTGAAAGTGCTAAGGATCTTGTTCGAAGAATGCTTATAAGGGACCCTAAGAAACGGTTGACAGCACATGAAGTTCTTTGCCACCCTTGGGTTCAGGTTGGAGGTGTTGCTCCTGATAAACCGCTTGATTCTGCTGTCTTAACTCGTTTGAAGCAATTCTCTGCAATGAACAAGCTAAAAAAAATAGCCATTCGAGTAATTGCTGAAAGTCTGTCTGAGGAGGAAATTGCAGGACTGAAAGAAATGTTCAAGATGATAGACACAGATAATAGCGGACAGATCACTCTTGAGGAACTGAAAAATGGTTTAGAGAGAGTGGGTTCCGTTCTTAAGGATTCTGAAATTAACTGGTTAATGCAAGCGGCAGACGTTGATAACAGTGGTACCATAGACTACGGTGAATTCATAGCGGCAATGCTTCATCTAAACAAGATCCAAAAGGAGGATCATCTATTTGCAGCCTTCTCTTACTTTGATAAAGATGGTAGTGGATACATTACAAAGGACGAGCTCCAACAAGCCTGTGAACAGTTTGGCTTAAAAGATTATCATCTAGATGATATAATACGCGAAGTTGATCGGGATAATGTAATATACTGCATTTTAGTGGTTTACTATGATGGACGCATTGATTACAGTGAGTTTGTTGCAATGATGGAAGACACTGGTTTTGGCAAAAAGGGGTTATGA 1857 0.4523 MGNNCVGPNLGGNGFLQSVSAAVWKTRAPEASLPPPNSDDKNKSPAPANAASDSSNGGGSSSAGKGSDASNNNRSDGSRGVDPPMPVQSTPPEQVKITATETKPGQVQPEKPQVNNEPASSAGGGGDAGKAKKPTHVKRVSSVGLQVESVLGRKTENLKDFYSLGRKLGQGQFGTTFLCVEKGTNKDFACKSIAKRKLTTQEDVEDVRREIQIMHHLAGHPNVIQIIGAYEDAVAVHVVMELCAGGELFDRIIQRGHYTERKAAELARLIVSVVEACHSLGVMHRDLKPENFLFINNEEESPLKTIDFGLSVFFRPGETFTDVVGSPYYVAPEVLRKQYGPECDVWSAGVIIYILLSGVPPFWDETEQGIFEQVLRGELDFVSEPWPSISESAKDLVRRMLIRDPKKRLTAHEVLCHPWVQVGGVAPDKPLDSAVLTRLKQFSAMNKLKKIAIRVIAESLSEEEIAGLKEMFKMIDTDNSGQITLEELKNGLERVGSVLKDSEINWLMQAADVDNSGTIDYGEFIAAMLHLNKIQKEDHLFAAFSYFDKDGSGYITKDELQQACEQFGLKDYHLDDIIREVDRDNVIYCILVVYYDGRIDYSEFVAMMEDTGFGKKGL. 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05032 618 MobiDBLite consensus disorder prediction 37 78 - -
Seca8g05032 618 Pfam EF-hand domain pair 468 528 IPR002048 GO:0005509
Seca8g05032 618 MobiDBLite consensus disorder prediction 91 120 - -
Seca8g05032 618 ProSitePatterns EF-hand calcium-binding domain. 476 488 IPR018247 -
Seca8g05032 618 ProSiteProfiles Protein kinase domain profile. 162 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05032 618 PANTHER SERINE/THREONINE-PROTEIN KINASE 154 586 - -
Seca8g05032 618 ProSiteProfiles EF-hand calcium-binding domain profile. 499 534 IPR002048 GO:0005509
Seca8g05032 618 SMART efh_1 573 611 IPR002048 GO:0005509
Seca8g05032 618 SMART efh_1 467 495 IPR002048 GO:0005509
Seca8g05032 618 SMART efh_1 503 531 IPR002048 GO:0005509
Seca8g05032 618 SMART efh_1 539 567 IPR002048 GO:0005509
Seca8g05032 618 CDD STKc_CAMK 161 419 - -
Seca8g05032 618 FunFam Calcium-dependent protein kinase SK5 248 432 - -
Seca8g05032 618 ProSiteProfiles EF-hand calcium-binding domain profile. 535 570 IPR002048 GO:0005509
Seca8g05032 618 SUPERFAMILY EF-hand 460 608 IPR011992 -
Seca8g05032 618 ProSitePatterns Protein kinases ATP-binding region signature. 168 195 IPR017441 GO:0005524
Seca8g05032 618 FunFam Calcium-dependent protein kinase 1 164 247 - -
Seca8g05032 618 SUPERFAMILY Protein kinase-like (PK-like) 160 421 IPR011009 -
Seca8g05032 618 ProSitePatterns EF-hand calcium-binding domain. 548 560 IPR018247 -
Seca8g05032 618 Pfam Protein kinase domain 162 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05032 618 MobiDBLite consensus disorder prediction 26 140 - -
Seca8g05032 618 Pfam EF-hand domain 540 566 IPR002048 GO:0005509
Seca8g05032 618 Gene3D Phosphorylase Kinase; domain 1 164 247 - -
Seca8g05032 618 CDD EFh 468 528 IPR002048 GO:0005509
Seca8g05032 618 FunFam Calcium-dependent protein kinase 1 428 612 - -
Seca8g05032 618 SMART serkin_6 162 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05032 618 ProSitePatterns EF-hand calcium-binding domain. 512 524 IPR018247 -
Seca8g05032 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 282 294 IPR008271 GO:0004672|GO:0006468
Seca8g05032 618 Gene3D - 427 611 - -
Seca8g05032 618 Gene3D Transferase(Phosphotransferase) domain 1 248 424 - -
Seca8g05032 618 ProSiteProfiles EF-hand calcium-binding domain profile. 463 498 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05032 Seca-Chr8 139727666 139734796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05032 1 618 EF-hand Containing Proteins AT2G38910 72.786 0.0 910
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca8g05032 Pkinase 1.1e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05032 K13412 - gmx:100813232 1000.35