Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05003 ATGACTGACATCATTCATGAAGCTGGCATTGTTCCAGATCCCACCCAGCTTGACGTCAAACTCTTTAACCGCTGGAGCTTCGACGATGTTCAGGTTAATGACATTTCCCTGGCTGATTATATTGGAGTGGTGGCATCCAAGCATGCCACCTATGTTCCTCACACTGCTGGTAGGTACTCTGTCAAGCGGTTCAGGAAAGCCCAGTGCCCCATAGTTGAGAGGCTCACCAACTCTCTCATGATGCACGGTAGAAATAATGGCAAGAAACTTATGGCCGTTAGGATCATCAAGCATGCCATGGAAATTATTCATTTGTTGACTGACCAGAACCCTATTCAGGTCATTGTCGATGCTGTCATCAACAGTGGTCCACGTGAAGATGCAACTCGAATTGGTTCTGCTGGAGTTGTAAGGAGACAGGCTGTGGATATCTCTCCCCTTCGTCGTGTCAATCAGGCTATTTATCTTTTAACAACTGGTGCACGGGAAGCTGCTTTTAGAAATATTAAGACAATTGCTGAATGCTTGGCTGATGAACTTATTAATGCCGCAAAAGGTTCTTCCAACAGGTATTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCGTTGA 627 0.4482 MTDIIHEAGIVPDPTQLDVKLFNRWSFDDVQVNDISLADYIGVVASKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNRYYAIKKKDEIERVAKANR. 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05003 208 NCBIfam 30S ribosomal protein S7 19 208 IPR005716 GO:0003735|GO:0006412|GO:0015935
Seca8g05003 208 Gene3D Ribosomal protein S7 domain 8 208 IPR036823 -
Seca8g05003 208 CDD uS7_Eukaryote 20 208 IPR005716 GO:0003735|GO:0006412|GO:0015935
Seca8g05003 208 FunFam 40S ribosomal protein S5 6 208 - -
Seca8g05003 208 Pfam Ribosomal protein S7p/S5e 61 208 IPR023798 -
Seca8g05003 208 ProSitePatterns Ribosomal protein S7 signature. 73 99 IPR020606 GO:0003723|GO:0003735|GO:0006412
Seca8g05003 208 PIRSF RPS7p_RPS7a_RPS5e_RPS7o 3 208 IPR000235 GO:0006412
Seca8g05003 208 PANTHER RIBOSOMAL PROTEIN S7 18 208 IPR000235 GO:0006412
Seca8g05003 208 SUPERFAMILY Ribosomal protein S7 20 208 IPR036823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05003 Seca-Chr8 139394279 139396587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05003 18 208 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 91.623 3.62e-130 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05003 K02989 - gmx:100305898 372.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05003 8 139394279 139396587 Seca8g05003 8 139394279 139396587 ECH