Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04996 ATGTCGGTTTTATCTAGCATGGAGCTGCCCACAACAGATATAGACCTTGGGCATGAGAAGATTGGGAATGAGAAAGAGGGAGGACCCTTGTTCCATTGTGATCTATGTGACACAGAATTAGTTCACAAGCTGGCTCAAATGTTCCTGCCAGGACTAGCCTCTGCCTGTATTGATAACACAACAGGAGATCCCTTCAAGTCTCCTGGTTCAGTGGCTGTTGATTTGAGGAAGGAAATGATAGATTTCCTTACCCATAGAAGTGAATCATTTGTTGCTGAGTCTGTTATCTTAGAAGCTGATCCTGATGGTGAAGTGCTGGATCATCCTTTTGATATTATTTCTTGTTTTGTCGATGAATTTGTGAATTCGAAGAGGAATTTGTTGAGTCAGGTTTCAGGATGGCTGCTAAGTGAGTTGAGAGAAGACAAAATAGATGATTTTGTTCAAGAGATGGAAATGAATGGTTTTTGGTCATTAGATAGAAGAGAAAAGGTTGCAGAAACTTTGCTTAAGAATGTTGACTTCAAGAACTCATTTCACTGCAGCATGAGTTTCAATTCTGCAGAAGATCTTGCAAAACATGTTGATAAGTGCAACTTCAGACCTATGATCTGCCAAAATGAGGGATGCAATGCCAGATTTAGCACAGGTCAATTAAAGGAGCATGATTCAACTTGCCCTTTTAAGATAATTCCTTGTGAACAGAAGTGTACAGATAGCATTATGAGACGTGAGATGGACAGGCACTGCATAACTGTTTGTCCAATGAAACTTGTGAACTGTCCTTTCTATGCAGTGGGTTGTCAATCTGCTATTGCACAATGTTTGGTTGGAAAACATTGTTCAGATGACCTTCATTCTCACTTATTGCACATGCTTAAAGGCATCCACAGGGAAGCATCTGGTGAAGATCTTAAACGACGAGTAGAGAAAATTGTACAGGCATCATCAAGCAGCAGGTTAGCAGAAGCCCACGATGTGAGATCTTTAAAAATTATTGTCAAAGATCTTGAAGCTAAGCTAGGGCCTTTGGAAATGAGTGCCATGGAGAAAACTAGTGCAGAAACAGTTGTCAAGAGTGAAGACAGTAGCACCAAAACAAAGGGCGGTGAGCAGAGCACACAAGCTTTAAATTCATCAGATAAAGCTGAAACGAGTGCTAGCTTGAATAAGAATAGTGCAGAGAATGCTGTGAATAATAAAGATGATGAGCATAAGGAAAATGGAAAGTAA 1233 0.4023 MSVLSSMELPTTDIDLGHEKIGNEKEGGPLFHCDLCDTELVHKLAQMFLPGLASACIDNTTGDPFKSPGSVAVDLRKEMIDFLTHRSESFVAESVILEADPDGEVLDHPFDIISCFVDEFVNSKRNLLSQVSGWLLSELREDKIDDFVQEMEMNGFWSLDRREKVAETLLKNVDFKNSFHCSMSFNSAEDLAKHVDKCNFRPMICQNEGCNARFSTGQLKEHDSTCPFKIIPCEQKCTDSIMRREMDRHCITVCPMKLVNCPFYAVGCQSAIAQCLVGKHCSDDLHSHLLHMLKGIHREASGEDLKRRVEKIVQASSSSRLAEAHDVRSLKIIVKDLEAKLGPLEMSAMEKTSAETVVKSEDSSTKTKGGEQSTQALNSSDKAETSASLNKNSAENAVNNKDDEHKENGK. 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04996 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 225 286 IPR013083 -
Seca8g04996 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 171 224 IPR013083 -
Seca8g04996 410 MobiDBLite consensus disorder prediction 350 410 - -
Seca8g04996 410 Pfam TRAF-type zinc finger 222 274 IPR001293 GO:0008270
Seca8g04996 410 PANTHER TNF RECEPTOR ASSOCIATED FACTOR 30 406 - -
Seca8g04996 410 SUPERFAMILY TRAF domain-like 189 232 - -
Seca8g04996 410 ProSiteProfiles Zinc finger TRAF-type profile. 222 268 IPR001293 GO:0008270
Seca8g04996 410 MobiDBLite consensus disorder prediction 367 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04996 Seca-Chr8 139305705 139310196 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca8g04996 zf-TRAF 3.3e-10 CL0389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04996 - - gmx:100802183 631.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g04996 8 139305705 139310196 Seca8g04996 8 139305705 139310196 ECH
Seca8g04996 8 139305705 139310196 Seca2g04962 2 136225932 136230062 PCT