Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04994 ATGCGGGGTAGAAGCTACAGTTACAGTCCCTCACCTCCAAGGCGTTACAGCCGAAGAAGGCGCAGTCCTAGCCCTAGGGGTCGTTACGGAGGCCGTGGTAGGGATTTGCCAACTAGTCTCCTGGTCCGGAACCTCCACAGAGATTGCAGGTCAGAAGATCTGCACGGTCGGTTTGGCCAATTTGGTCCTCTCAAGGATGTTTACCTGCCTCGTGATTATTATACTGGGGAGCCAAGAGGTTTTGGGTTTGTTCAATATGTGGACCCAGCTGATGCTGCAGATGCAAAATATCACATGGATGGGCAAATTCTTCTTGGCCGTGAGTTAACTGTGGTGTTTGCTGAAGAAAACAGAAAAAAACCTGCAGAAATGAGAGCAAGGGAACGTCGGAGATATATCTCTAGGGATCGGTCTTATGAATATAGGCGATCTCGTTCACCACGCTACGGAAGAACATATTCCCCTAGTCCAGATTATTCACCTTCTCCACAACAAAGGCGATATTCCAGAGAGTGTCCTCCTTCATTATTGATTGAATTGAACAGGTCAATCTCACCAAGAGACAGAAGGTATAGGAGGCGATCATACTCTAGATCACCTTATGGATCAAGAAGCCGTAGTCAAAGCAGGAGTTACAGCAGGAGCATGAGCCGGAGTCCTGGCTACTCTCGGTGA 675 0.4844 MRGRSYSYSPSPPRRYSRRRRSPSPRGRYGGRGRDLPTSLLVRNLHRDCRSEDLHGRFGQFGPLKDVYLPRDYYTGEPRGFGFVQYVDPADAADAKYHMDGQILLGRELTVVFAEENRKKPAEMRARERRRYISRDRSYEYRRSRSPRYGRTYSPSPDYSPSPQQRRYSRECPPSLLIELNRSISPRDRRYRRRSYSRSPYGSRSRSQSRSYSRSMSRSPGYSR. 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04994 224 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 109 IPR000504 GO:0003723
Seca8g04994 224 MobiDBLite consensus disorder prediction 1 36 - -
Seca8g04994 224 SUPERFAMILY RNA-binding domain, RBD 38 141 IPR035979 GO:0003676
Seca8g04994 224 MobiDBLite consensus disorder prediction 137 224 - -
Seca8g04994 224 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 37 217 - -
Seca8g04994 224 MobiDBLite consensus disorder prediction 149 169 - -
Seca8g04994 224 Gene3D - 34 154 IPR012677 -
Seca8g04994 224 MobiDBLite consensus disorder prediction 200 224 - -
Seca8g04994 224 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
Seca8g04994 224 SMART rrm1_1 39 112 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04994 Seca-Chr8 139271418 139273157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04994 38 135 Eukaryotic Initiation Factors Gene Family AT1G71770 32.323 1.13e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04994 K12900 - jre:108985117 211.075