Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04992 ATGGCAGTGGCATCTTCACTTCGCTTGGCTTCACGTTTGACTAAACCGTCACCATTTCACCTCTTCGCATTCTCATTCTCTACCACCTCACCGCCACAACAACGCCCTCCTCCCATCCGAGTCGCCCTCACCGACTCAGTGGGCCGCGCCGTTTTCGCAACTCGGCCGATCCCCGCCGGCGACCTCATCCACACCGCCGAACCCGCTGTCTGCCACCCTTCTCCCTCTGCCCTCAACTCCGTCTGCTACTCCTGCCTAGCCAAGCTCCCAACTCTCTCCACACCGTTTTGCAGCCACAATTGCCACCAACGCTCTAAGGAATATTACGATGTTGAGATGAAAGCAAATTGGATGGACTTTGATAACTATTGCCGGAACCATGGGTTGAAATATCCCTTGCTGGTAAAGCGGTTGGCTTGCATGATCATATCAGGAGTTGCCAGAAGTGACAGTCTTGACATACTTCAACCTGCCAATTTGACTCATGAGATGATTTTAGAGATGGAGGAGGAATTTACCTTGCTAAGGAATGCCTTCACAAAAGCACATATTGCAGACAAACATATTGCTTGTATCCTCCTTGTGTCAGGAACATTTTGTATAAACGTTTTGGCACGAATTCGAATCAATGCATTTCGCATTGAGTTGGCTGGAGGACTATATGGAGATCTTCTTTCTTCTGCAGTTGCACTAGTAGAAGCTGAAGCTGCTGTTGGAAATGCTGTCTATATACTTCCTTCCTTCTATAATCATGACTGCGATCCTAATACACACATTATATGGATAGATAATGCACATGCAAAATTGAAGGCCCTCCGTGACATTGACGAAGGTGAAGAGCTCAGAATCTGCTATATCGATGCCAGCCTGGACCGTGATGCCCGGCAAGAATTATTGTTTCGAGGTTTTGGTTTTCAATGTAATTGTAGTAGGTGTTTGCATGGCGATTAG 951 0.4732 MAVASSLRLASRLTKPSPFHLFAFSFSTTSPPQQRPPPIRVALTDSVGRAVFATRPIPAGDLIHTAEPAVCHPSPSALNSVCYSCLAKLPTLSTPFCSHNCHQRSKEYYDVEMKANWMDFDNYCRNHGLKYPLLVKRLACMIISGVARSDSLDILQPANLTHEMILEMEEEFTLLRNAFTKAHIADKHIACILLVSGTFCINVLARIRINAFRIELAGGLYGDLLSSAVALVEAEAAVGNAVYILPSFYNHDCDPNTHIIWIDNAHAKLKALRDIDEGEELRICYIDASLDRDARQELLFRGFGFQCNCSRCLHGD. 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04992 316 Gene3D - 127 211 - -
Seca8g04992 316 CDD SET_SMYD 239 312 - -
Seca8g04992 316 Gene3D - 81 126 - -
Seca8g04992 316 ProSiteProfiles SET domain profile. 37 286 IPR001214 GO:0005515
Seca8g04992 316 Pfam SET domain 48 285 IPR001214 GO:0005515
Seca8g04992 316 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 35 314 - -
Seca8g04992 316 Gene3D SET domain 50 312 IPR046341 -
Seca8g04992 316 SMART set_7 37 292 IPR001214 GO:0005515
Seca8g04992 316 SUPERFAMILY SET domain 36 310 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04992 Seca-Chr8 139230179 139235240 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca8g04992 SET 3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04992 - - tpra:123906125 467.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g04992 8 139230179 139235240 Seca8g04992 8 139230179 139235240 ECH