Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04990 ATGGGCGTCAATTCCTTGCCATCGGAGCAATCTACCTTCGATCTCGACGAGCAGATCTCACAGCTCATGCAATGCAAGCCACTTTCCGAGCAACAGGTTAGAGTTTTATGCGAGAAGGCTAAGGAGATTTTTATGAGTGAAAGTAATGTCCAGCCTGTGAAAAGCCCTGTGACAATTTGTGGCGATATTCATGGGCAGTTTCATGATCTTGCTGAACTATTCCGAATTGGAGGGAAGGTATCAGTTCTGACTATCACTTTCCTTTTGTATTCAACTCTTCTGTTTCAGCTGGGGAATTGCCCAGATACTAATTACTTGTTCATGGGTGATTATGTGGACCGGGGTTATTATTCAGTTGAAACTGTAACACTCCTTGTGGCACTGAAAGTGCGGTATCCTCAGCGAATTACAGTTCTTAGAGGAAACCATGAAAGCCGACAGATCACTCAAGTATATGGATTTTACGATGAATGCCTAAGAAAATTCTCAGTTTTGAGATGTTTATATTTTGATATCAATGAATATGTGGCAACATCTGGTTGTATCAATAGTGACACTGTGGAAGTTGCATGGTGTACAGTATACACTATATCACTGATAACAGATCATCATGACAAACTGATAACATCAGGATGTCTGTTGTCTGTATTGTTGGCATTAGGGAGAATCGTGTATGGTAATGCTATTGTTTGGAAGATCTTTACAGACCTTTTTGATTTCTTTCCATTGACTGCATTGGTTGAATCAGAAATCTTTTGTTTGCATGGTGGACTTTCACCTTCAATTGAGACCCTTGATAACATAAGGAGCTTTGATCGTGTTCAAGAGGTTCCTCATGAAGGGCCCATGTGTGATCTGTTGTGGTCTGACCCAGATGATAGATGTGGCTGGGGAATTTCTCCTCGTGGTGCTGGGTATACTTTTGGCCAGGATATATCTGAACAATTTAATCACACAAACAGTCTTAAGTTGATTGCTAGAGCTCATCAGCTAGTTATGGATGGATTCAACTGGGCTCATGAACAAAAGGTGGTTACCATTTTTAGTGCACCTAACTACTGCTATCGATGTGGGAACATGGCTTCCATTTTGGAGGTTGACGATTCCAAAGGCCACACATTTATCCAGTTTGAACCTGCTCCCCGGAGAGGAGAACCTGATGTCACCCGTAGAACGCCTGATTATTTCCTATGA 1194 0.4179 MGVNSLPSEQSTFDLDEQISQLMQCKPLSEQQVRVLCEKAKEIFMSESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKVSVLTITFLLYSTLLFQLGNCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITVLRGNHESRQITQVYGFYDECLRKFSVLRCLYFDINEYVATSGCINSDTVEVAWCTVYTISLITDHHDKLITSGCLLSVLLALGRIVYGNAIVWKIFTDLFDFFPLTALVESEIFCLHGGLSPSIETLDNIRSFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNSLKLIARAHQLVMDGFNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDSKGHTFIQFEPAPRRGEPDVTRRTPDYFL. 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04990 397 SUPERFAMILY Metallo-dependent phosphatases 9 382 IPR029052 -
Seca8g04990 397 Gene3D - 8 397 IPR029052 -
Seca8g04990 397 PRINTS Serine/threonine phosphatase family signature 56 83 IPR006186 GO:0016787
Seca8g04990 397 PRINTS Serine/threonine phosphatase family signature 343 359 IPR006186 GO:0016787
Seca8g04990 397 PRINTS Serine/threonine phosphatase family signature 105 132 IPR006186 GO:0016787
Seca8g04990 397 PRINTS Serine/threonine phosphatase family signature 138 162 IPR006186 GO:0016787
Seca8g04990 397 PRINTS Serine/threonine phosphatase family signature 265 292 IPR006186 GO:0016787
Seca8g04990 397 PRINTS Serine/threonine phosphatase family signature 321 341 IPR006186 GO:0016787
Seca8g04990 397 SMART pp2a_7 28 381 IPR006186 GO:0016787
Seca8g04990 397 ProSitePatterns Serine/threonine specific protein phosphatases signature. 139 144 IPR006186 GO:0016787
Seca8g04990 397 PIRSF PPPtase_5 223 390 - -
Seca8g04990 397 PIRSF PPPtase_5 4 195 - -
Seca8g04990 397 Pfam Calcineurin-like phosphoesterase 56 330 IPR004843 GO:0016787
Seca8g04990 397 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 224 397 IPR047129 GO:0004722
Seca8g04990 397 MobiDBLite consensus disorder prediction 378 397 - -
Seca8g04990 397 CDD MPP_PP2A_PP4_PP6 14 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04990 Seca-Chr8 139212710 139219646 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04990 9 327 Calmodulin-binding Proteins AT5G63870 30.030 1.45e-19 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04990 K04382 - ath:AT3G58500 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g04990 8 139212710 139219646 Seca8g04990 8 139212710 139219646 ECH