Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04989 ATGTCTGCAACTATGAGAACTTCATGGGCAGATTCTGCTGACAATACCAATGGTTCTTCCAATAACAATGCTTCGGCACGCCGGTCAGCATATGTTCCTCCACATCTTCGAAACCGGCCATTGTCTTCAGAGCCCCCTGCACCTGCACCTGCAACATCATACTCATCCTCTTTGCAGGCTAATGACAGGGGAAATTATGGTGGTCCGGCCTCTGGTCCTCATGGGGGAAGCTTCTCTAGGCCTGATCATGGTCGGCAAGGATTTGGTTCAAATGCTCAAACTGGTGCTGGCTGGAACAGTAGAGGAGCAGGGAGGGACCGTGGGAGGCGTGAGGTGAATCCTTTTGAGAATGATGAAGCTGCAGATCAATCTATTGGTGAGCAAGAGAACACTGGCATTAACTTTGATGCTTATGATGATATCCCTGTGGAGACTAGTGGGGAGAATGTTCCCCCACCTGTGAATACATTCGCAGAAATAGATTTGGGTGAGGCAGTGAATCAAAACATACAGAGATGCAAGTATGTCAAACCAACCCCGGTTCAGAGGTATGCCATACCAATTTCTCTTGCGGGGCGAGATTTGATGGCTTGTGCTCAGACAGGGTCAGGAAAGACAGCTGCCTTTTGCTTTCCTATTATAAGCGGAATCATGAGAGAGCAGTATGTTCAAAGACCGCGTGTAGCACGGACTGCTTTCCCTCTGGCACTTATCCTCTCCCCTACCCGGGAGCTTTCATGCCAGATACATGATGAGGCCAGAAAGTTTTCTTATCAAACTGGTGTCAAGGTGGTAGTTGCTTATGGAGGAGCCCCAATCACCCAACAGTTGCGGGAGCTTGAGAGAGGAGTTGATATTCTGGTGGCAACTCCTGGACGATTAGTAGATTTGCTTGAGAGGGCTAGGGTGTCATTGCAGATGATAAGATATTTGGCTCTTGATGAGGCAGATCGGATGCTGGATATGGGTTTTGAGCCTCAAATAAGAAAGATAGTTGAACAGATGGACATGCCTCCTCCAGGCATGAGACAGACACTGCTGTTTAGTGCCACATTTCCCAAAGAGATACAGGGACTGGCATCGGATTTTCTTTCAAATTATGTGTTTCTGGCTGTTGGAAGGGTCGGTTCAAGTACTGATCTGATTGCTCAAAGAGTAGAATATGTGCTTGAGTCAGACAAGAGAAGCCACCTTATGGACCTTCTTCATGCTCAGAAGGAAAATGGAATTTATGGCAAGCAAGGTCTGACCTTAGTTTTTGTGGAAACAAAGAAAGGAGCTGACGCGTTGGAACACTGCTTATGTGTTAATGGGTTTCCTGCAACTTGCATTCATGGCGACAGGACACAACAAGAAAGAGAACAAGCACTGAGGTCGTTCAAGAGTGGAAACACACCGATTCTAGTGGCAACGGATGTTGCAGCACGTGGTCTTGATATTCCAAGGGTAGCACATGTGGTAAATTTTGATCTCCCCAATGACATTGATGATTATGTGCACAGGATAGGAAGAACAGGGCGAGCTGGTAAAATGGGATTAGCAACAGCCTTCTTCAATGACAGTAATTTGTCCTTGGCTAAACCATTGGCTGATCTGATGCAAGAGGCAAATCAAGAAGTACCTGTCTGGCTCACCCGTTATGCAGCAAGGGCTTCTTACAGTGGTGGCAACAGAAATAGGCGGTCAGGGGGCCGTTTTGGTGGCCGCGATTTTAGGAAGGAGAGCTCATATAATAAAGGAACAGATTATTATGGTGGTGGAGCTGGTGGATATGGGGTTCCTGGAAATTATGGTGGAGGGTATGGTCAAGGTGTGACAAGTGCTTGGGATTAG 1833 0.4719 MSATMRTSWADSADNTNGSSNNNASARRSAYVPPHLRNRPLSSEPPAPAPATSYSSSLQANDRGNYGGPASGPHGGSFSRPDHGRQGFGSNAQTGAGWNSRGAGRDRGRREVNPFENDEAADQSIGEQENTGINFDAYDDIPVETSGENVPPPVNTFAEIDLGEAVNQNIQRCKYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRVARTAFPLALILSPTRELSCQIHDEARKFSYQTGVKVVVAYGGAPITQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFSATFPKEIQGLASDFLSNYVFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQKENGIYGKQGLTLVFVETKKGADALEHCLCVNGFPATCIHGDRTQQEREQALRSFKSGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNDSNLSLAKPLADLMQEANQEVPVWLTRYAARASYSGGNRNRRSGGRFGGRDFRKESSYNKGTDYYGGGAGGYGVPGNYGGGYGQGVTSAWD. 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04989 610 Pfam Helicase conserved C-terminal domain 394 509 IPR001650 -
Seca8g04989 610 Gene3D - 110 372 IPR027417 -
Seca8g04989 610 CDD SF2_C_DEAD 382 518 - -
Seca8g04989 610 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 235 524 IPR027417 -
Seca8g04989 610 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 186 370 IPR014001 -
Seca8g04989 610 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 397 548 IPR001650 -
Seca8g04989 610 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 121 548 - -
Seca8g04989 610 MobiDBLite consensus disorder prediction 554 573 - -
Seca8g04989 610 FunFam ATP-dependent RNA helicase RhlB 373 552 - -
Seca8g04989 610 CDD DEADc_DDX3_DDX4 156 376 IPR044763 GO:0003724|GO:0005524
Seca8g04989 610 SMART helicmild6 428 509 IPR001650 -
Seca8g04989 610 Pfam DEAD/DEAH box helicase 179 357 IPR011545 GO:0003676|GO:0005524
Seca8g04989 610 SMART ultradead3 174 385 IPR014001 -
Seca8g04989 610 MobiDBLite consensus disorder prediction 103 117 - -
Seca8g04989 610 Gene3D - 373 553 IPR027417 -
Seca8g04989 610 FunFam Probable ATP-dependent RNA helicase DDX4 118 372 - -
Seca8g04989 610 MobiDBLite consensus disorder prediction 48 64 - -
Seca8g04989 610 MobiDBLite consensus disorder prediction 1 28 - -
Seca8g04989 610 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 155 183 IPR014014 GO:0003724
Seca8g04989 610 MobiDBLite consensus disorder prediction 1 131 - -
Seca8g04989 610 MobiDBLite consensus disorder prediction 84 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04989 Seca-Chr8 139190928 139198537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04989 153 542 Eukaryotic Initiation Factors Gene Family AT3G19760 31.298 6.62e-61 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04989 K11594 - gmx:100818326 953.74