Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04983 ATGGACAACAATTCTGCAAATAATGTATCTGTTCATGAATGTGATTCTGATTTCCATGTCAATACCAATTGCAATTCGAAGGGCCATAATAGTTTACGAGATGATGGTGTTCATTTGGATGAGGGAAAGAAAAAGTCAGATGAGGAGATTAAGAGTCTAGAATTTGATTTTGAGGAACATGCCTTTCAATTTTATAGCAATTATGCTAAGAACATTGGTTTTGCTGTTAGAAAAGATGACACTTATCATGATGAAAAGAGTGGTATAGTAATAAGGAATTTAGTTTGTAATAGGGAAGGCCTAAGGAGGAAGAAACATTTAGATAGGAAGGATCGGTGTCGTGAGCCTAGACCTCTTACTCGGATAGAATGCAAAGCACGACTTAAAATTTATGAAATAAAGAAATTGTGGGCAACAACATATATGCGTGATTGTTTTTTAGGCGGCATTAGGACTACAAGTATTTATGAAGGTATTAATTCCTTCATCAAGAGGTATGTTCAGAACAAGAATAGCCTTTTTGAATTCTTACAAAATTTTGAGAGGGCTATAAAGGAGTATAGGCATAATGAGCTAATGTCTGATTTTAAGACCAAGTTCAGTGACCCTGTCTTGACTACAGCTTTGTATAAGTATGAGGTTGCTGCCTCAAAAATATATACAAGGAACAAGTTTTTTGATGTGAGGAAAGAGCTTGAAAATATTGCTGCTCTTAATGTGATTGATAGGAATGAAGTGGATAACAATGTCCGGTTGAAGATTAATAAGTTTGGAAGCCCAAGCTCTGAGTATGTGGTTTTGCATGATAAGTCAAGGGGTGTTATACTTTGTGATTGTCATCAATTTGAATCATGTGGAATTCCGTGTTCCCATATCTTTTGTGCAATGAAGTATGAGCATATGGAGGTTATTCCAGATTCATTAGTTTGTAAGAGGTGGACAAAGTCAGCTAAATCTGACTTCATATCTGCCATTGAAATTGAAGATAGGGATACTTCAAAGTTAGATTTATTGAGGACTGGAGCTGTTGCTCATGCTTGTAACAACCTTTACAGAACTGCGTGTAAGTACATGGGAAATTATTCTATTAATATTGACTCAATTAACAAGTTAACTGAGCAAATTGAGAAGCAAGGAGCTTTTGATAAGAGGAGTCATAATGGGGTGAATGTTGTTGGTGATCCTGATGTTGTTAAGACCAAAGGTGTTCCACACATGGGGAAGAATAGGAGAAAAAGAAGACATTGCTCACACTGCAAGAGAACATGTCATTATGTAACTAAATGTCCCATATTAAAGGATCGTGACTAG 1311 0.36 MDNNSANNVSVHECDSDFHVNTNCNSKGHNSLRDDGVHLDEGKKKSDEEIKSLEFDFEEHAFQFYSNYAKNIGFAVRKDDTYHDEKSGIVIRNLVCNREGLRRKKHLDRKDRCREPRPLTRIECKARLKIYEIKKLWATTYMRDCFLGGIRTTSIYEGINSFIKRYVQNKNSLFEFLQNFERAIKEYRHNELMSDFKTKFSDPVLTTALYKYEVAASKIYTRNKFFDVRKELENIAALNVIDRNEVDNNVRLKINKFGSPSSEYVVLHDKSRGVILCDCHQFESCGIPCSHIFCAMKYEHMEVIPDSLVCKRWTKSAKSDFISAIEIEDRDTSKLDLLRTGAVAHACNNLYRTACKYMGNYSINIDSINKLTEQIEKQGAFDKRSHNGVNVVGDPDVVKTKGVPHMGKNRRKRRHCSHCKRTCHYVTKCPILKDRD. 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04983 436 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 35 130 IPR031052 GO:0006355
Seca8g04983 436 ProSiteProfiles Zinc finger SWIM-type profile. 264 300 IPR007527 GO:0008270
Seca8g04983 436 SMART 26again6 275 302 IPR006564 GO:0008270
Seca8g04983 436 Pfam FAR1 DNA-binding domain 63 131 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04983 Seca-Chr8 139081211 139083395 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca8g04983 FAR1 6.3e-14 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04983 - - tpra:123910662 316.235