Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04977 ATGTTGTGCTGCGGGGGTGCAGAAGAAGATATCAGCGGTCTACCTGCAAACCATTACAGTACATCACCTAGAGGGGGTAATACATACGGTGGTGGAGGAGGCGGTGACAGAGGAGAGCCAAAGGGCAATGTTGTTAAGAGTGGTGCTCCGCAGAAAGCATTACCAATTGAGATACCCGCTATTCCATTGGATGAGTTAAATCGGTTAACAGACAACTTTGGTACAAAGGCTTTGATTGGAGAAGGTTCCTATGGGAGGGTTTACCATGCAAAGTTGAGCAATGGTTTAGATGCTGCAATTAAGAAGCTGGATACTAGTTCTTCGCCAGAACCTGACTCTGATTTTGCAGTACAGTTATCAGTTGTTTCAAGACTAAAGCATGACCATTTTGTGGAGTTGATGGGTTATTGTCTGGAGGCAAATAACAGGATTTTGGTTTATCAATATGCAAGTCTGGGTTCTTTGCATGACATTTTACATGGAAGGAAAGGAGTGCAAGGAGCTGAACCTGGTCCAGTTTTGAACTGGAACCAAAGAGTAAAAATTGCTTTTGGTGCAGCAAAAGGACTTGAGTTTCTTCATGAGAAGGTTCAGCCTTCTATAGTTCATCGCGATGTTAGATCCAGCAATGTGTTATTATTCAATGACTATGAGGCTAAGATTGCAGATTTCAGTTTGACAAATCAGTCTTCTGACACAGCAGCCAGGCTACATTCAACAAGAGTCTTGGGAACATTTGGCTATCATGCTCCTGAGTATGCCATGACTGGGCAGATAACCCAGAAAAGCGATGTTTACAGTTTTGGGGTTGTGCTTTTAGAACTCTTGACAGGAAGAAAGCCAGTGGACCATACAATGCCCAAGGGGCAACAAAGTCTTGTAACATGGGCAACTCCAAGACTGAGTGAGGACAAAGTGAAACAATGTGTGGATCCTAAGCTAAACAACGACTACCCACCAAAGGCAATTGCTAAGTTGGCAGCGGTTGCAGCACTTTGTGTTCAGTATGAAGCTGACTTTAGGCCAAACATGACGATTGTTGTCAAAGCTCTTCAGCCACTTCTCAATTCAAAACCGGCCGGTCCTGAATCTAGTGCTTGA 1101 0.4396 MLCCGGAEEDISGLPANHYSTSPRGGNTYGGGGGGDRGEPKGNVVKSGAPQKALPIEIPAIPLDELNRLTDNFGTKALIGEGSYGRVYHAKLSNGLDAAIKKLDTSSSPEPDSDFAVQLSVVSRLKHDHFVELMGYCLEANNRILVYQYASLGSLHDILHGRKGVQGAEPGPVLNWNQRVKIAFGAAKGLEFLHEKVQPSIVHRDVRSSNVLLFNDYEAKIADFSLTNQSSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLNNDYPPKAIAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNSKPAGPESSA. 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04977 366 FunFam PTI1-like tyrosine-protein kinase 3 151 360 - -
Seca8g04977 366 FunFam probable protein kinase At2g41970 46 149 - -
Seca8g04977 366 ProSiteProfiles Protein kinase domain profile. 73 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04977 366 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 3 359 - -
Seca8g04977 366 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
Seca8g04977 366 ProSitePatterns Tyrosine protein kinases specific active-site signature. 201 213 IPR008266 GO:0004672|GO:0006468
Seca8g04977 366 SMART tyrkin_6 73 351 IPR020635 GO:0004713|GO:0006468
Seca8g04977 366 Pfam Protein tyrosine and serine/threonine kinase 77 351 IPR001245 GO:0004672|GO:0006468
Seca8g04977 366 Gene3D Transferase(Phosphotransferase) domain 1 151 362 - -
Seca8g04977 366 MobiDBLite consensus disorder prediction 14 47 - -
Seca8g04977 366 SUPERFAMILY Protein kinase-like (PK-like) 53 351 IPR011009 -
Seca8g04977 366 Gene3D Phosphorylase Kinase; domain 1 46 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04977 Seca-Chr8 138043449 138046671 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04977 64 354 Trihelix Transcription Factor Family AT5G38560 44.444 1.80e-84 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Seca8g04977 PK_Tyr_Ser-Thr 1.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04977 - - gmx:100786291 648.662