Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04976 ATGGAGCTTCCTTGCAGATATCAAAATCTAGGTTGTCATGATATATTCCCATACTACACTAAGCTTAAGCATGAGCAAAATTGTCCATTTCGTCCATACAGTTGCCCCTATGCTGGATCAGAGTGTTCTGTGATGGGTGACATTCCAACTCTTTTGGCCCACCTCAAGGATGATCACAAGGTTGACATGCATGATGGATGCACCTTTAACCATCGATATGTCAAATCAAATCCACATGAAGTTGAAAATGCCACATGGATGCTAACTGTTTTTAATTGTTTTGGAAGACATTTCTGTTTGCATTTTGAGGCATTTCTGCTCGGCACAGCTCCAGTTTATATGGCTTTTTTACGATTTTTGGGTGATGACAATGAGGCAAGTAAATTCAAGTACAGTTTGGAAGTTGGTGCAAATAGCCGCAAACTTATATGGCAAGGAATTCCAAGGAGCATTCGTGATAGTCATAGAAAAGTTCGTGACAGTCAAGATGGACTCATCATTCAGAGGAACCTAGCTCTTTATTTTTCTGGTGGTGATAGGCAACAATTAAAGTTGAGGATCACTGGTCGTATATGGAAAGAAGATTGA 588 0.3997 MELPCRYQNLGCHDIFPYYTKLKHEQNCPFRPYSCPYAGSECSVMGDIPTLLAHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRHFCLHFEAFLLGTAPVYMAFLRFLGDDNEASKFKYSLEVGANSRKLIWQGIPRSIRDSHRKVRDSQDGLIIQRNLALYFSGGDRQQLKLRITGRIWKED. 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04976 195 ProSiteProfiles Zinc finger SIAH-type profile. 1 60 IPR013010 GO:0008270
Seca8g04976 195 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 55 188 IPR008974 GO:0005515
Seca8g04976 195 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 2 194 - -
Seca8g04976 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 54 IPR013083 -
Seca8g04976 195 FunFam E3 ubiquitin-protein ligase SINAT3 1 55 - -
Seca8g04976 195 SUPERFAMILY TRAF domain-like 3 191 - -
Seca8g04976 195 FunFam E3 ubiquitin-protein ligase SINAT5-like 56 188 - -
Seca8g04976 195 Pfam Seven in absentia protein family 2 188 IPR018121 GO:0005737|GO:0006511|GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04976 Seca-Chr8 138037581 138040492 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04976 1 195 C3H Transcription Factor Family AT2G41980 86.667 9.84e-132 370