Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04972 ATGGAGCTCGCTTTGAGCTTAGGAGACACACCAAAGCCCTTCTCTTTCCTCGACAAGCCCACAAAAGACCCACCGGGTTTCTGCATAGCACGAGGAGGTACTACTTTCACCGCAGAGGAAAAAAATGGCGACGATGAAACAAGAGGTTCTTCAGATCCACCCGTTCAGCTAGACCTTCTTCCTTTCACTCCGGTTCTCAGATCCAACCCTTCTTCTCACCTTAAAATCCCTTGGCTCACCGATCCATATAATGGAATTAATATTCATCGTTCAGTGTTAGTTGCACGCGATGAACGAATGAGGCTGGACGTGAACCGTTTCCCGGTGGCGACGGCGGCGGTTGAAGACGGCGACGACGGTACCTCACTGTCGTCATCCCCTAACAGTGCGGTGTCACCGTTTCAAATGGATTTCGGTATGAGGAATAGCAATGCAGAGTACGGTGCGAGAAACAAGAGAGAACACGAGGGTGAGGCAGAGAGAGCGAGTTCAAGAGCGAGTGATGACGAGGAAAACGGGTCAACTCGGAAGAAACTCAGACTCTCTAAGGAACAATCAGCTTTTCTAGAAGAAAGCTTCAAAGAACACTCCACTCTCAATCCTAAGCAGAAACTTGCACTGGCAAAACAGTTGAATCTTCGTCCTCGTCAAGTGGAAGTTTGGTTTCAGAATAGAAGGGCAAGGACAAAGTTGAAGCAGACGGAAGTGGATTGTGAGTATTTGAAGAGATTGTGTGACGCACTAACAGATGAGAATAGGAAGTTACAGAAGGAACTGCAAGAACTAAGAGCCTTGAAAACTTCTCAACCGTTTTACATGCAACTTCCAGCTACCACTCTCACCATGTGTCCCTCTTGTGAACGCGTAGCTACCAATCCCTGCACTGCCCCTACCAATCAAACTACAAACAACACTTATCCAATCCCAGTGGAGTTGTCGCTTAGCAAGCCCAGAATATTGCCCTTCTCTAATACCCAAGCCCAACAACAACAGGCCCAAACCCCCCAGATGGCTTCATGA 1020 0.4804 MELALSLGDTPKPFSFLDKPTKDPPGFCIARGGTTFTAEEKNGDDETRGSSDPPVQLDLLPFTPVLRSNPSSHLKIPWLTDPYNGINIHRSVLVARDERMRLDVNRFPVATAAVEDGDDGTSLSSSPNSAVSPFQMDFGMRNSNAEYGARNKREHEGEAERASSRASDDEENGSTRKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRLCDALTDENRKLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNPCTAPTNQTTNNTYPIPVELSLSKPRILPFSNTQAQQQQAQTPQMAS. 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04972 339 ProSitePatterns 'Homeobox' domain signature. 207 230 IPR017970 GO:0000981|GO:0006355
Seca8g04972 339 Coils Coil 238 268 - -
Seca8g04972 339 MobiDBLite consensus disorder prediction 147 181 - -
Seca8g04972 339 MobiDBLite consensus disorder prediction 115 181 - -
Seca8g04972 339 MobiDBLite consensus disorder prediction 1 54 - -
Seca8g04972 339 MobiDBLite consensus disorder prediction 118 139 - -
Seca8g04972 339 Pfam Homeobox associated leucine zipper 232 266 IPR003106 GO:0006355|GO:0043565
Seca8g04972 339 ProSiteProfiles 'Homeobox' domain profile. 172 232 IPR001356 GO:0003677
Seca8g04972 339 Coils Coil 152 172 - -
Seca8g04972 339 SMART HOX_1 174 236 IPR001356 GO:0003677
Seca8g04972 339 SUPERFAMILY Homeodomain-like 168 233 IPR009057 -
Seca8g04972 339 FunFam Homeobox-leucine zipper protein 18 160 237 - -
Seca8g04972 339 Pfam Homeodomain 176 230 IPR001356 GO:0003677
Seca8g04972 339 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 50 303 - -
Seca8g04972 339 CDD homeodomain 176 233 IPR001356 GO:0003677
Seca8g04972 339 Gene3D - 180 230 - -
Seca8g04972 339 Pfam HD-ZIP protein N terminus 69 132 IPR006712 GO:0005634
Seca8g04972 339 SMART halz 232 275 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04972 Seca-Chr8 137941370 137943146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04972 168 327 Homeobox Transcription Factor Family AT4G37790 66.061 2.43e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca8g04972 HD-ZIP_N 0.00016 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04972 K09338 - gmx:100776113 416.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g04972 8 137941370 137943146 Seca8g04972 8 137941370 137943146 ECH
Seca8g04972 8 137941370 137943146 Seca2g04143 2 124871870 124873379 PCT