Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04970 ATGAACCTTGATTTGAATCTGGGGCCGGGCCCAGAGCCCTTAGCTGGTGCCATGGAAAGTGAAGCTTTGAACGTGGATGATTGGATTGAGGAACCTTTTCACAGAATTAGTGAAGCAATGAGGCGTAGGGCTCGACATCGGCGGCGATGGCGCCATTACCACCAACGTCGTCATGCTCTTCATGATTTTCCTGAACCTCATGTTCATGATGTCCCGAGTGAAGCTTGGTGGCGCCAATTTGCCACCGCGGAAGATATGTCTTTTGAATTGAATCACTTTTTGGTTAATTCTGGCAATGGAAGTGTGCTGCAGACTGGGGAAGGCAGTGTGACAGCTGAGGAAAGAGCAGAGGAGGTGCCAAAGGCATGTGACATTAACAACTGTGGTGTTACATTGGATGAGACATCAGAGAAGGAGGAGGATGTTGAAAAGGGCCGTGGTAATGATGGCGGGTTTTTCGATTGCAATATTTGTTTGGACCTGGCTAAGGACCCTGTTGTGACTTGTTGTGGTCATTTGTTTTGTTGGCCATGTGTATATACATGGCTGCATTTGCATTCGGATTCTAAGGAATGTCCAGTTTGCAAAGGAGAAGTTACTGTTGATAGTGTTACCCCGATATATGGTCGTGGGAACAATGCCCGTGTTCCTGATGAAGATTCCACCCTGAAAATCCCTCTCAGGCCCAATGCAAGGCATGTCTCAGAGGATTCAACTTTGAGACAAAGCATTCAAAGGAATGTGTTTACTATGCCTGTGGAAGAGATGATTCGGCGTCTTGGAAGCAGACTCGATCTTAATCAGGATTTAGTTCAGCCAAATGAGCATGACAATGCACCCGAAACAGGAGAGAGGGCTAGTTCCTTGTTGAGTAGGTCTATGGCAGCTAGGCTGCCTAGATATGTTAGGAGAGAGCATAACCTTGGTGCAGCACCCCCAGATGATGCAGTGAGTTTAACACAGAACAGTATAGGCGGTTCTTTGGTTGGGGATAGCCGCAGGGTACAAACCCTTTTGCTTCGAAGAATGCAAGCACATAGAGGAACCTTTTCATCAACATTGAGTTCTGCTGAAAGGTTAGTTGAGGCATATTTCCATAACAATCCATTAGGTAGAAACCGAGAACAACCTCCTCCTGTTGAAGACAGGGATTCCTTTTCTAGCATTGGTGCTGTCATAAATTCAGAGAGTCAAGTGGACACTGCTGTAGAAATTGATTCCATGGTGTCCTTGTCAACATCCACTTCCAGGAGGAGAAATGATGCTTCAAGAGTGTCTGATGTCGATAGTGGAGATTCTCGTGCTCCAAGGCGAAGACGTTTGAACTAA 1329 0.4635 MNLDLNLGPGPEPLAGAMESEALNVDDWIEEPFHRISEAMRRRARHRRRWRHYHQRRHALHDFPEPHVHDVPSEAWWRQFATAEDMSFELNHFLVNSGNGSVLQTGEGSVTAEERAEEVPKACDINNCGVTLDETSEKEEDVEKGRGNDGGFFDCNICLDLAKDPVVTCCGHLFCWPCVYTWLHLHSDSKECPVCKGEVTVDSVTPIYGRGNNARVPDEDSTLKIPLRPNARHVSEDSTLRQSIQRNVFTMPVEEMIRRLGSRLDLNQDLVQPNEHDNAPETGERASSLLSRSMAARLPRYVRREHNLGAAPPDDAVSLTQNSIGGSLVGDSRRVQTLLLRRMQAHRGTFSSTLSSAERLVEAYFHNNPLGRNREQPPPVEDRDSFSSIGAVINSESQVDTAVEIDSMVSLSTSTSRRRNDASRVSDVDSGDSRAPRRRRLN. 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04970 442 ProSiteProfiles Zinc finger RING-type profile. 155 196 IPR001841 -
Seca8g04970 442 MobiDBLite consensus disorder prediction 420 442 - -
Seca8g04970 442 FunFam Zinc finger family protein 136 209 - -
Seca8g04970 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 209 IPR013083 -
Seca8g04970 442 Pfam Zinc finger, C3HC4 type (RING finger) 155 195 - -
Seca8g04970 442 SUPERFAMILY RING/U-box 152 208 - -
Seca8g04970 442 MobiDBLite consensus disorder prediction 410 442 - -
Seca8g04970 442 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 126 328 IPR045103 GO:0005783|GO:0006511|GO:0061630
Seca8g04970 442 CDD RING-HC_AtRMA-like 153 196 - -
Seca8g04970 442 ProSitePatterns Zinc finger RING-type signature. 170 179 IPR017907 -
Seca8g04970 442 SMART ring_2 155 195 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04970 Seca-Chr8 137883118 137884446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04970 1 433 C3H Transcription Factor Family AT3G58030 49.002 7.78e-117 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04970 K10666 - gmx:100811099 572.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g04970 8 137883118 137884446 Seca8g04970 8 137883118 137884446 ECH